4IH3 | pdb_00004ih3

2.5 Angstroms X-ray crystal structure of of human 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase in complex with dipicolinic acid

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4ih3a_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d4ih3b_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d4ih3c_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d4ih3d_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E	d4ih3e_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d4ih3f_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Metallo-dependent hydrolases	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Metallo-dependent hydrolases	8086504	3000428	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Metallo-dependent hydrolases	8086504	3000428	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Metallo-dependent hydrolases	8086504	3000428	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Metallo-dependent hydrolases	8086504	3000428	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Metallo-dependent hydrolases	8086504	3000428	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Metallo-dependent hydrolases	8086504	3000428	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e4ih3A1	A: HTH	X: Toll/Interleukin receptor TIR domain	H: Toll/Interleukin receptor TIR domain	T: Pkinase, ABC1	F:	ECOD (20:10:01)
B		e4ih3B1	A: HTH	X: Toll/Interleukin receptor TIR domain	H: Toll/Interleukin receptor TIR domain	T: Pkinase, ABC1	F:	ECOD (20:10:01)
C		e4ih3C1	A: HTH	X: Toll/Interleukin receptor TIR domain	H: Toll/Interleukin receptor TIR domain	T: Pkinase, ABC1	F:	ECOD (20:10:01)
D		e4ih3D1	A: HTH	X: Toll/Interleukin receptor TIR domain	H: Toll/Interleukin receptor TIR domain	T: Pkinase, ABC1	F:	ECOD (20:10:01)
E		e4ih3E1	A: HTH	X: Toll/Interleukin receptor TIR domain	H: Toll/Interleukin receptor TIR domain	T: Pkinase, ABC1	F:	ECOD (20:10:01)
F		e4ih3F1	A: HTH	X: Toll/Interleukin receptor TIR domain	H: Toll/Interleukin receptor TIR domain	T: Pkinase, ABC1	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)
B	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)
C	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)
D	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)
E	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)
F	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF04909	Amidohydrolase (Amidohydro_2)	Amidohydrolase	These proteins are amidohydrolases that are related to Pfam:PF01979 [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	2-amino-3-carboxymuconate-6-semialdehyde decarboxylase	hydrolase activity catalytic activity aminocarboxymuconate-semialdehyde decarboxylase activity carboxy-lyase activity lyase activity carbon-carbon lyase activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding	catabolic process oxoacid metabolic process aromatic amino acid family catabolic process indole-containing compound metabolic process amino acid metabolic process organic acid catabolic process organic acid metabolic process alpha-amino acid metabolic process L-tryptophan metabolic process carboxylic acid catabolic process small molecule metabolic process amino acid catabolic process aromatic amino acid metabolic process L-amino acid catabolic process catabolic process oxoacid metabolic process aromatic amino acid family catabolic process indole-containing compound metabolic process amino acid metabolic process organic acid catabolic process organic acid metabolic process alpha-amino acid metabolic process L-tryptophan metabolic process carboxylic acid catabolic process small molecule metabolic process amino acid catabolic process aromatic amino acid metabolic process L-amino acid catabolic process carboxylic acid metabolic process primary metabolic process L-tryptophan catabolic process L-amino acid metabolic process proteinogenic amino acid metabolic process alpha-amino acid catabolic process proteinogenic amino acid catabolic process indole-containing compound catabolic process metabolic process cellular process small molecule catabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process picolinic acid biosynthetic process pyridine-containing compound biosynthetic process organic acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process pyridine-containing compound metabolic process monocarboxylic acid metabolic process secondary metabolic process negative regulation of small molecule metabolic process regulation of cellular process regulation of quinolinate biosynthetic process negative regulation of biological process negative regulation of quinolinate biosynthetic process quinolinate biosynthetic process regulation of small molecule metabolic process negative regulation of cellular process dicarboxylic acid biosynthetic process regulation of biosynthetic process regulation of biological process quinolinate metabolic process negative regulation of metabolic process biological regulation dicarboxylic acid metabolic process negative regulation of biosynthetic process regulation of metabolic process nucleotide biosynthetic process NAD+ biosynthetic process regulation of nucleotide biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process regulation of nucleotide metabolic process phosphate-containing compound metabolic process regulation of nucleobase-containing compound metabolic process phosphorus metabolic process NAD+ metabolic process pyridine nucleotide biosynthetic process nucleoside phosphate metabolic process nicotinamide nucleotide metabolic process nucleotide metabolic process regulation of purine nucleotide metabolic process nicotinamide nucleotide biosynthetic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process regulation of phosphorus metabolic process purine nucleotide biosynthetic process regulation of NAD metabolic process purine nucleotide metabolic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process regulation of amino acid metabolic process regulation of 'de novo' NAD biosynthetic process from L-tryptophan regulation of purine nucleotide biosynthetic process 'de novo' NAD+ biosynthetic process from L-tryptophan nucleobase-containing compound biosynthetic process purine-containing compound metabolic process organophosphate metabolic process regulation of L-tryptophan metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR006680	Amidohydrolase-related	Domain
A, B, C, D, E A, B, C, D, E, F	IPR032466	Metal-dependent hydrolase	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR032465	2-amino-3-carboxymuconate-6-semialdehyde decarboxylase	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F	Pharos: Q8TDX5	malignant ependymoma pancreatic ductal adenocarcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.