4IWM

Crystal Structure of the Conserved Hypothetical Protein MJ0927 from Methanocaldococcus jannaschii (in P21 form)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d4iwmc_	Alpha and beta proteins (a/b)	NIF3 (NGG1p interacting factor 3)-like	NIF3 (NGG1p interacting factor 3)-like	automated matches	automated matches	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)
D	d4iwmd_	Alpha and beta proteins (a/b)	NIF3 (NGG1p interacting factor 3)-like	NIF3 (NGG1p interacting factor 3)-like	automated matches	automated matches	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)
E	d4iwme_	Alpha and beta proteins (a/b)	NIF3 (NGG1p interacting factor 3)-like	NIF3 (NGG1p interacting factor 3)-like	automated matches	automated matches	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)
A	d4iwma_	Alpha and beta proteins (a/b)	NIF3 (NGG1p interacting factor 3)-like	NIF3 (NGG1p interacting factor 3)-like	automated matches	automated matches	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)
B	d4iwmb_	Alpha and beta proteins (a/b)	NIF3 (NGG1p interacting factor 3)-like	NIF3 (NGG1p interacting factor 3)-like	automated matches	automated matches	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)
F	d4iwmf_	Alpha and beta proteins (a/b)	NIF3 (NGG1p interacting factor 3)-like	NIF3 (NGG1p interacting factor 3)-like	automated matches	automated matches	(Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	NIF3-like	8076253	3001101	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	NIF3-like	8076253	3001101	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	NIF3-like	8076253	3001101	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	NIF3-like	8076253	3001101	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	NIF3-like	8076253	3001101	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	NIF3-like	8076253	3001101	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	NIF3_1st	e4iwmC1	A: a/b three-layered sandwiches	X: NIF3 (NGG1p interacting factor 3)-like (From Topology)	H: NIF3 (NGG1p interacting factor 3)-like (From Topology)	T: NIF3 (NGG1p interacting factor 3)-like	F: NIF3_1st	ECOD (1.6)
D	NIF3_1st	e4iwmD2	A: a/b three-layered sandwiches	X: NIF3 (NGG1p interacting factor 3)-like (From Topology)	H: NIF3 (NGG1p interacting factor 3)-like (From Topology)	T: NIF3 (NGG1p interacting factor 3)-like	F: NIF3_1st	ECOD (1.6)
E	NIF3_1st	e4iwmE1	A: a/b three-layered sandwiches	X: NIF3 (NGG1p interacting factor 3)-like (From Topology)	H: NIF3 (NGG1p interacting factor 3)-like (From Topology)	T: NIF3 (NGG1p interacting factor 3)-like	F: NIF3_1st	ECOD (1.6)
A	NIF3_1st	e4iwmA1	A: a/b three-layered sandwiches	X: NIF3 (NGG1p interacting factor 3)-like (From Topology)	H: NIF3 (NGG1p interacting factor 3)-like (From Topology)	T: NIF3 (NGG1p interacting factor 3)-like	F: NIF3_1st	ECOD (1.6)
B	NIF3_1st	e4iwmB1	A: a/b three-layered sandwiches	X: NIF3 (NGG1p interacting factor 3)-like (From Topology)	H: NIF3 (NGG1p interacting factor 3)-like (From Topology)	T: NIF3 (NGG1p interacting factor 3)-like	F: NIF3_1st	ECOD (1.6)
F	NIF3_1st	e4iwmF1	A: a/b three-layered sandwiches	X: NIF3 (NGG1p interacting factor 3)-like (From Topology)	H: NIF3 (NGG1p interacting factor 3)-like (From Topology)	T: NIF3 (NGG1p interacting factor 3)-like	F: NIF3_1st	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.40.1390.30	Alpha Beta	3-Layer(aba) Sandwich	Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase	Chain: A, domain 1	CATH (4.3.0)
D	3.40.1390.30	Alpha Beta	3-Layer(aba) Sandwich	Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase	Chain: A, domain 1	CATH (4.3.0)
E	3.40.1390.30	Alpha Beta	3-Layer(aba) Sandwich	Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase	Chain: A, domain 1	CATH (4.3.0)
A	3.40.1390.30	Alpha Beta	3-Layer(aba) Sandwich	Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase	Chain: A, domain 1	CATH (4.3.0)
B	3.40.1390.30	Alpha Beta	3-Layer(aba) Sandwich	Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase	Chain: A, domain 1	CATH (4.3.0)
F	3.40.1390.30	Alpha Beta	3-Layer(aba) Sandwich	Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase	Chain: A, domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF01784	Duf34/NIF3 (NGG1p interacting factor 3) (DUF34_NIF3)	Duf34/NIF3 (NGG1p interacting factor 3)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	UPF0135 protein MJ0927	DNA binding binding nucleic acid binding cation binding ion binding metal ion binding small molecule binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR002678	DUF34/NIF3	Family
A, B, C, D, E A, B, C, D, E, F	IPR036069	DUF34/NIF3 superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.