4J4D | pdb_00004j4d

Structure of P51G Cyanovirin-N swapped dimer in the P21212 space group

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D [auth B]	d4j4db_	All beta proteins	Cyanovirin-N	Cyanovirin-N	Cyanovirin-N	Cyanovirin-N	(Nostoc ellipsosporum ) [TaxId: 45916 ],	SCOPe (2.08)
C [auth D]	d4j4dd_	All beta proteins	Cyanovirin-N	Cyanovirin-N	Cyanovirin-N	Cyanovirin-N	(Nostoc ellipsosporum ) [TaxId: 45916 ],	SCOPe (2.08)
B [auth C]	d4j4dc_	All beta proteins	Cyanovirin-N	Cyanovirin-N	Cyanovirin-N	Cyanovirin-N	(Nostoc ellipsosporum ) [TaxId: 45916 ],	SCOPe (2.08)
A	d4j4da_	All beta proteins	Cyanovirin-N	Cyanovirin-N	Cyanovirin-N	Cyanovirin-N	(Nostoc ellipsosporum ) [TaxId: 45916 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth B]	SCOP2B Superfamily	Cyanovirin-N	8043158	3002001	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	Cyanovirin-N	8043158	3002001	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	Cyanovirin-N	8043158	3002001	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cyanovirin-N	8043158	3002001	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth B]		e4j4dB1	A: beta-Grasp	X: Ubiquitin-related	H: Ubiquitin-like	T: 14-3-3	F:	ECOD (20:10:01)
C [auth D]		e4j4dD1	A: beta-Grasp	X: Ubiquitin-related	H: Ubiquitin-like	T: 14-3-3	F:	ECOD (20:10:01)
B [auth C]		e4j4dC1	A: beta-Grasp	X: Ubiquitin-related	H: Ubiquitin-like	T: 14-3-3	F:	ECOD (20:10:01)
A		e4j4dA1	A: beta-Grasp	X: Ubiquitin-related	H: Ubiquitin-like	T: 14-3-3	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C [auth D]	2.30.60.10	Mainly Beta	Roll	HIV-inactivating Protein, Cyanovirin-n	Cyanovirin-N	CATH (4.3.0)
B [auth C]	2.30.60.10	Mainly Beta	Roll	HIV-inactivating Protein, Cyanovirin-n	Cyanovirin-N	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth C], C [auth D], D [auth B]	Cyanovirin-N	binding carbohydrate binding oligosaccharide binding	regulation of defense response regulation of response to biotic stimulus regulation of biological process biological process involved in interspecies interaction between organisms response to stimulus regulation of response to external stimulus defense response response to other organism biological regulation response to external stimulus response to biotic stimulus regulation of defense response to virus defense response to virus regulation of response to stimulus response to stress regulation of defense response regulation of response to biotic stimulus regulation of biological process biological process involved in interspecies interaction between organisms response to stimulus regulation of response to external stimulus defense response response to other organism biological regulation response to external stimulus response to biotic stimulus regulation of defense response to virus defense response to virus regulation of response to stimulus response to stress regulation of response to stress response to external biotic stimulus response to virus	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth C], C [auth D], D [auth B]	IPR036673	Cyanovirin-N superfamily	Homologous Superfamily
A, B [auth C], C [auth D], D [auth B]	IPR011058	Cyanovirin-N	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.