Three dimensional structure of broadly neutralizing anti - Hepatitis C virus (HCV) glycoprotein E2 alpaca nanobody D03
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d4jvpb1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | alpaca (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
| B | d4jvpb2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | alpaca (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
| A | d4jvpa1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | alpaca (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
| A | d4jvpa2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | alpaca (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | e4jvpB1 | A: EF-hand | X: EF-hand-related | H: EF-hand | T: SH3_1 | F: | ECOD (20:10:01) | |
| A | e4jvpA1 | A: Long alpha-hairpin | X: C-terminal UvrC-binding domain of UvrB | H: C-terminal UvrC-binding domain of UvrB | T: SNase | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| ANTI-HCV E2 ALPACA NANOBODY D03 | VH | Vicugna pacos (alpaca) | IGHV3S1*01 | V-DOMAIN VH | TR | (VH) | IMGT (202609-0) |
