4KD5 | pdb_00004kd5

substrate binding domain of putative molybdenum ABC transporter from Clostridium difficile

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A [auth C]	d4kd5c_	Alpha and beta proteins (a/b)	Periplasmic binding protein-like II	Periplasmic binding protein-like II	automated matches	automated matches	(Clostridioides difficile 630 ) [TaxId: 272563 ],	SCOPe (2.08)
B [auth A]	d4kd5a_	Alpha and beta proteins (a/b)	Periplasmic binding protein-like II	Periplasmic binding protein-like II	automated matches	automated matches	(Clostridioides difficile 630 ) [TaxId: 272563 ],	SCOPe (2.08)
C [auth B]	d4kd5b_	Alpha and beta proteins (a/b)	Periplasmic binding protein-like II	Periplasmic binding protein-like II	automated matches	automated matches	(Clostridioides difficile 630 ) [TaxId: 272563 ],	SCOPe (2.08)
D	d4kd5d_	Alpha and beta proteins (a/b)	Periplasmic binding protein-like II	Periplasmic binding protein-like II	automated matches	automated matches	(Clostridioides difficile 630 ) [TaxId: 272563 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth C]	SCOP2B Superfamily	Type 2 solute binding protein-like	8080514	3000083	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	Type 2 solute binding protein-like	8080514	3000083	SCOP2B (2022-06-29)
C [auth B]	SCOP2 Family	Phosphate binding protein-like	8080513	4000229	SCOP2 (2022-06-29)
C [auth B]	SCOP2 Superfamily	Type 2 solute binding protein-like	8080514	3000083	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	Type 2 solute binding protein-like	8080514	3000083	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth C]	LysR_substrate	e4kd5C1	A: alpha bundles	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: LysR_substrate	ECOD (develop294)
B [auth A]	LysR_substrate	e4kd5A1	A: alpha bundles	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: LysR_substrate	ECOD (develop294)
C [auth B]	LysR_substrate	e4kd5B1	A: alpha bundles	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: LysR_substrate	ECOD (develop294)
D	LysR_substrate	e4kd5D1	A: alpha bundles	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: LysR_substrate	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth C]	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (4.3.0)
B [auth A]	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (4.3.0)
C [auth B]	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (4.3.0)
D	3.40.190.10	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth C], B [auth A], C [auth B], D	PF13531	Bacterial extracellular solute-binding protein (SBP_bac_11)	Bacterial extracellular solute-binding protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C], B [auth A], C [auth B], D	ABC-type transport system, molybdenum-specific extracellular solute-binding protein	molybdate ion binding ion binding binding anion binding small molecule binding tungstate binding cation binding metal ion binding	localization transport establishment of localization molybdate ion transport inorganic anion transport	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth C], B [auth A], C [auth B], D	IPR005950	Molybdate ABC transporter, substrate-binding protein	Family
A [auth C], B [auth A], C [auth B], D	IPR050682	Molybdate-binding protein ModA/tungstate-binding	Family
A [auth C], B [auth A], C [auth B], D	IPR041879	YvgL-like, substrate binding domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.