Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B | SCOP2 Family | Ribosomal S3Ae | 8048446 | 4006095 | SCOP2 (2022-06-29) |
| B | SCOP2 Superfamily | Ribosomal S3Ae-like | 8053208 | 3002166 | SCOP2 (2022-06-29) |
| E | SCOP2 Family | Ribosomal protein S4e, C-terminal KOW domain-like | 8044894 | 4004197 | SCOP2 (2022-06-29) |
| E | SCOP2 Family | Cold shock DNA-binding domain-like | 8048388 | 4001909 | SCOP2 (2022-06-29) |
| E | SCOP2 Family | Eukaryotic ribosomal protein S4e-like | 8050326 | 4006847 | SCOP2 (2022-06-29) |
| E | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052747 | 3000334 | SCOP2 (2022-06-29) |
| E | SCOP2 Superfamily | Nucleic acid-binding proteins | 8052746 | 3000135 | SCOP2 (2022-06-29) |
| E | SCOP2 Superfamily | Alpha-L RNA-binding motif | 8052745 | 3001473 | SCOP2 (2022-06-29) |
| Q | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082683 | 3000100 | SCOP2B (2022-06-29) |
| W | SCOP2B Superfamily | Ribosomal protein S8 | 8079081 | 3000709 | SCOP2B (2022-06-29) |
| Z | SCOP2 Family | Ribosomal protein S25-like | 8051323 | 4007308 | SCOP2 (2022-06-29) |
| Z | SCOP2 Superfamily | Winged helix DNA-binding domain | 8090991 | 3000034 | SCOP2 (2022-06-29) |
| AA [auth a] | SCOP2 Family | Ribosomal protein S26e | 8048836 | 4006236 | SCOP2 (2022-06-29) |
| AA [auth a] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053150 | 3000068 | SCOP2 (2022-06-29) |
| DA [auth d] | SCOP2 Family | Ribosomal protein S14p/S29e | 8047578 | 4003647 | SCOP2 (2022-06-29) |
| DA [auth d] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052584 | 3000068 | SCOP2 (2022-06-29) |
| EA [auth e] | SCOP2 Family | Ribosomal protein S30e-like | 8046413 | 4005067 | SCOP2 (2022-06-29) |
| EA [auth e] | SCOP2 Superfamily | Ribosomal protein S30e-like | 8053455 | 3002190 | SCOP2 (2022-06-29) |
| I | SCOP2 Family | Ribosomal protein S8e | 8048716 | 4006189 | SCOP2 (2022-06-29) |
| I | SCOP2 Superfamily | 50S Ribosomal protein L14-like | 8053075 | 3000433 | SCOP2 (2022-06-29) |
| G | SCOP2 Family | Ribosomal protein S6e | 8048556 | 4006143 | SCOP2 (2022-06-29) |
| G | SCOP2 Superfamily | GS N-terminal domain-like | 8053172 | 3000408 | SCOP2 (2022-06-29) |
| F | SCOP2B Superfamily | Ribosomal protein S7 | 8066001 | 3000799 | SCOP2B (2022-06-29) |
| CA [auth c] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8095265 | 3000135 | SCOP2B (2022-06-29) |
| V | SCOP2 Family | Ribosomal protein S21e | 8048776 | 4006215 | SCOP2 (2022-06-29) |
| V | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053140 | 3000068 | SCOP2 (2022-06-29) |
| U | SCOP2 Family | Ribosomal protein S10 | 8097813 | 4001240 | SCOP2 (2022-06-29) |
| U | SCOP2 Superfamily | Ribosomal protein S10 | 8097814 | 3001336 | SCOP2 (2022-06-29) |
| T | SCOP2B Superfamily | Winged helix DNA-binding domain | 8089322 | 3000034 | SCOP2B (2022-06-29) |
| S | SCOP2B Superfamily | S13-like H2TH domain | 8101439 | 3000053 | SCOP2B (2022-06-29) |
| O | SCOP2B Superfamily | Translational machinery components | 8097824 | 3000571 | SCOP2B (2022-06-29) |
| N | SCOP2 Family | 40S Ribosomal protein S13, N-terminal domain-like | 8050308 | 4006843 | SCOP2 (2022-06-29) |
| N | SCOP2 Family | 30S Ribosomal protein S15 / 40S Ribosomal protein S13 | 8052969 | 4000767 | SCOP2 (2022-06-29) |
| N | SCOP2 Superfamily | Homeodomain-like | 8052970 | 3000001 | SCOP2 (2022-06-29) |
| N | SCOP2 Superfamily | S15/NS1 RNA-binding domain | 8052971 | 3001284 | SCOP2 (2022-06-29) |
| M | SCOP2B Superfamily | L30e-like | 8063980 | 3001739 | SCOP2B (2022-06-29) |
| L | SCOP2 Family | Ribosomal S17 N-terminal domain-like | 8045081 | 4004290 | SCOP2 (2022-06-29) |
| L | SCOP2 Family | Cold shock DNA-binding domain-like | 8052706 | 4001909 | SCOP2 (2022-06-29) |
| L | SCOP2 Superfamily | Ribosomal S17 N-terminal domain-like | 8052708 | 3002138 | SCOP2 (2022-06-29) |
| L | SCOP2 Superfamily | Nucleic acid-binding proteins | 8052707 | 3000135 | SCOP2 (2022-06-29) |
| K | SCOP2 Family | eS10-like | 8051609 | 4007434 | SCOP2 (2022-06-29) |
| K | SCOP2 Superfamily | Winged helix DNA-binding domain | 8055712 | 3000034 | SCOP2 (2022-06-29) |
| A | SCOP2 Family | Ribosomal protein S2-like | 8044909 | 4003744 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | SIS domain/Ribosomal protein S2-like | 8052790 | 3001397 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | Bromodomain | e4kzyB1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: EGF-related | T: Complement control module/SCR domain | F: Bromodomain | ECOD (develop294) |
| C | Lactamase_B | e4kzyC3 | A: alpha bundles | X: amino-terminal domain of OmpATb | H: amino-terminal domain of OmpATb | T: amino-terminal domain of OmpATb | F: Lactamase_B | ECOD (develop294) |
| C | KAsynt_C_assoc | e4kzyC1 | A: alpha bundles | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: Type II ABC importer transmembrane domain fold | F: KAsynt_C_assoc | ECOD (develop294) |
| E | Glu_cyclase_2 | e4kzyE1 | A: alpha bundles | X: jelly-roll | H: Galactose-binding domain-like | T: Galactose-binding domain-like | F: Glu_cyclase_2 | ECOD (develop294) |
| J | FlaF_Ig-like | e4kzyJ1 | A: alpha bundles | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: FlaF_Ig-like | ECOD (develop294) |
| P | Cellulase | e4kzyP1 | A: alpha bundles | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: Cellulase | ECOD (develop294) |
| Q | Cellulase | e4kzyQ1 | A: alpha bundles | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: Cellulase | ECOD (develop294) |
| W | Bromodomain | e4kzyW1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: EGF-related | T: Complement control module/SCR domain | F: Bromodomain | ECOD (develop294) |
| Y | Bromodomain | e4kzyY1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: EGF-related | T: Complement control module/SCR domain | F: Bromodomain | ECOD (develop294) |
| Z | Bromodomain | e4kzyZ1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: EGF-related | T: Complement control module/SCR domain | F: Bromodomain | ECOD (develop294) |
| AA [auth a] | Bromodomain | e4kzya1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: EGF-related | T: Complement control module/SCR domain | F: Bromodomain | ECOD (develop294) |
| DA [auth d] | Bromodomain | e4kzyd1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: EGF-related | T: Complement control module/SCR domain | F: Bromodomain | ECOD (develop294) |
| EA [auth e] | KAsynt_C_assoc | e4kzye1 | A: alpha bundles | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: Type II ABC importer transmembrane domain fold | F: KAsynt_C_assoc | ECOD (develop294) |
| FA [auth f] | Bromodomain | e4kzyf1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: EGF-related | T: Complement control module/SCR domain | F: Bromodomain | ECOD (develop294) |
| I | Bromodomain | e4kzyI1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: EGF-related | T: Complement control module/SCR domain | F: Bromodomain | ECOD (develop294) |
| H | Ribosomal_S13_N | e4kzyH1 | A: alpha bundles | X: DEATH domain | H: 40S ribosomal protein S13 N-terminal domain | T: 40S ribosomal protein S13 N-terminal domain | F: Ribosomal_S13_N | ECOD (develop294) |
| G | Bromodomain | e4kzyG1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: EGF-related | T: Complement control module/SCR domain | F: Bromodomain | ECOD (develop294) |
| F | Bromodomain | e4kzyF1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: EGF-related | T: Complement control module/SCR domain | F: Bromodomain | ECOD (develop294) |
| D | Bromodomain | e4kzyD1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: EGF-related | T: Complement control module/SCR domain | F: Bromodomain | ECOD (develop294) |
| D | AsnC_trans_reg_3 | e4kzyD3 | A: alpha bundles | X: DEATH domain | H: Ten stranded beta/alpha barrel | T: Ten stranded beta/alpha barrel | F: AsnC_trans_reg_3 | ECOD (develop294) |
| JA [auth n] | Bromodomain | e4kzyn1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: EGF-related | T: Complement control module/SCR domain | F: Bromodomain | ECOD (develop294) |
| IA [auth l] | Bromodomain | e4kzyl1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: EGF-related | T: Complement control module/SCR domain | F: Bromodomain | ECOD (develop294) |
| GA [auth g] | Bromodomain | e4kzyg1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: EGF-related | T: Complement control module/SCR domain | F: Bromodomain | ECOD (develop294) |
| CA [auth c] | Bromodomain | e4kzyc1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: EGF-related | T: Complement control module/SCR domain | F: Bromodomain | ECOD (develop294) |
| BA [auth b] | Bromodomain | e4kzyb1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: EGF-related | T: Complement control module/SCR domain | F: Bromodomain | ECOD (develop294) |
| X | Bromodomain | e4kzyX1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: EGF-related | T: Complement control module/SCR domain | F: Bromodomain | ECOD (develop294) |
| V | Bromodomain | e4kzyV1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: EGF-related | T: Complement control module/SCR domain | F: Bromodomain | ECOD (develop294) |
| U | Bromodomain | e4kzyU1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: EGF-related | T: Complement control module/SCR domain | F: Bromodomain | ECOD (develop294) |
| T | Bromodomain | e4kzyT1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: EGF-related | T: Complement control module/SCR domain | F: Bromodomain | ECOD (develop294) |
| S | FlaF_Ig-like | e4kzyS1 | A: alpha bundles | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: FlaF_Ig-like | ECOD (develop294) |
| R | FmrO | e4kzyR1 | A: alpha bundles | X: Anticodon-binding domain of Class II aaRS | H: Anticodon-binding domain of Class II aaRS | T: Anticodon-binding domain of Class II aaRS | F: FmrO | ECOD (develop294) |
| O | Bromodomain | e4kzyO1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: EGF-related | T: Complement control module/SCR domain | F: Bromodomain | ECOD (develop294) |
| N | Ribosomal_S13_N | e4kzyN1 | A: alpha bundles | X: DEATH domain | H: 40S ribosomal protein S13 N-terminal domain | T: 40S ribosomal protein S13 N-terminal domain | F: Ribosomal_S13_N | ECOD (develop294) |
| M | Bromodomain | e4kzyM1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: EGF-related | T: Complement control module/SCR domain | F: Bromodomain | ECOD (develop294) |
| L | Ribosomal_S17,Ribosomal_S17_N | e4kzyL1 | A: alpha bundles | X: OB-fold | H: Nucleic acid-binding protein | T: Nucleic acid-binding protein | F: Ribosomal_S17,Ribosomal_S17_N | ECOD (develop294) |
| K | Bromodomain | e4kzyK1 | A: alpha bundles | X: immunoglobulin/albumin-binding domain-like | H: EGF-related | T: Complement control module/SCR domain | F: Bromodomain | ECOD (develop294) |
| A | FlaF_Ig-like | e4kzyA1 | A: alpha bundles | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: FlaF_Ig-like | ECOD (develop294) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family | |
| PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | ||
| PF01200 | Ribosomal protein S28e (Ribosomal_S28e) | Ribosomal protein S28e | Domain | ||
| PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | ||
| PF04758 | Ribosomal protein S30 (Ribosomal_S30) | Ribosomal protein S30 | - | Family | |
| PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family | |
| PF16121 | 40S ribosomal protein S4 C-terminus (40S_S4_C) | 40S ribosomal protein S4 C-terminus | - | Family | |
| PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain | |
| PF00467 | KOW motif (KOW) | KOW motif | - | Family | |
| PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family | |
| PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain | |
| PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | ||
| PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family | |
| PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | ||
| PF01282 | Ribosomal protein S24e (Ribosomal_S24e) | Ribosomal protein S24e | - | Family | |
| PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family | |
| PF01251 | Ribosomal protein S7e (Ribosomal_S7e) | Ribosomal protein S7e | - | Family | |
| PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family | |
| PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |
| PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain | |
| PF01599 | Ribosomal protein S27a (Ribosomal_S27) | Ribosomal protein S27a | This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ... | Domain | |
| PF07650 | KH domain (KH_2) | KH domain | Domain | ||
| PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family | |
| PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain | |
| PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain | |
| PF01249 | Ribosomal protein S21e (Ribosomal_S21e) | Ribosomal protein S21e | - | Family | |
| PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain | |
| PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family | |
| PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family | |
| PF00833 | Ribosomal S17 (Ribosomal_S17e) | Ribosomal S17 | - | Family | |
| PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family | |
| PF01176 | Translation initiation factor 1A / IF-1 (eIF-1a) | Translation initiation factor 1A / IF-1 | This family includes both the eukaryotic translation factor eIF-1A and the bacterial translation initiation factor IF-1. | Domain | |
| PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | ||
| PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain | |
| PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | ||
| PF16205 | Ribosomal_S17 N-terminal (Ribosomal_S17_N) | Ribosomal_S17 N-terminal | - | Family | |
| PF03501 | Plectin/S10 domain (S10_plectin) | Plectin/S10 domain | This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. | Domain | |
| PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family | |
| PF16122 | 40S ribosomal protein SA C-terminus (40S_SA_C) | 40S ribosomal protein SA C-terminus | - | Family |














