Crystal structure of broadly neutralizing antibody 5J8 bound to 2009 pandemic influenza hemagglutinin, HA1 subunit
External Resource: Annotation
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
A | Hemagglutinin_1st_1 | e4m5zA1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: Hemagglutinin_1st_1 | ECOD (1.6) |
B [auth H] | V-set_8 | e4m5zH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
B [auth H] | C1-set_1 | e4m5zH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
C [auth L] | C1-set | e4m5zL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set | ECOD (1.6) |
C [auth L] | V-set_3 | e4m5zL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
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B [auth H] | 5J8 Fab | VH-CH1 | Homo sapiens (human) | IGHV4-38-2*01, IGHJ4*01, IGHJ4*02, IGHJ4*03, IGHG1*03 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_LAMBDA | IMGT (202444-0) |
C [auth L] | 5J8 Fab | L-LAMBDA | Homo sapiens (human) | IGLV3-21*02, IGLV3-21*03, IGLJ2*01, IGLJ3*02, IGLJ3*01, IGLC2*01, IGLC2*02, IGLC3*04 | V-DOMAIN V-LAMBDA, C-DOMAIN C-LAMBDA | IG | FAB-GAMMA-1_LAMBDA | IMGT (202444-0) |
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
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B [auth H] | Heavy Chain | IGHV4 | - | hemagglutinin ha1 chain | SAbDab (2024-11-08) |
C [auth L] | Light Chain | IGLV3 | Lambda | hemagglutinin ha1 chain | SAbDab (2024-11-08) |
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
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| Hemagglutinin HA1 chain | | | |
B [auth H] | Fab 5J8 heavy chain | - | - | - |
C [auth L] | Fab 5J8 light chain | - | - | - |