Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyN-terminal domain of argonaute 8053630 4004602 SCOP2 (2022-06-29)
ASCOP2 FamilyPAZ domain 8053631 4000853 SCOP2 (2022-06-29)
ASCOP2 FamilyMid domain of argonaute 8053632 4004605 SCOP2 (2022-06-29)
ASCOP2 FamilyPIWI domain 8053633 4002242 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyRNA-binding domain, RBD 8053634 3000110 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyPAZ domain 8053635 3001750 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyMid domain of argonaute 8053636 3002210 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyRibonuclease H-like 8053637 3000143 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyMid domain of argonaute 8053636 3002210 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRibonuclease H-like 8053637 3000143 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPAZ domain 8053635 3001750 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRNA-binding domain, RBD 8053634 3000110 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AEUF07576e4ncbA5 A: beta barrelsX: SH3H: SH3T: SH3F: EUF07576ECOD (1.6)
AEUF08364e4ncbA1 A: a+b two layersX: Alpha-beta plaitsH: Argonaute, N-terminal domain (From Topology)T: Argonaute, N-terminal domainF: EUF08364ECOD (1.6)
AEUF08368e4ncbA2 A: a+b two layersX: Alpha-beta plaitsH: Argonaute, N-terminal domain (From Topology)T: Argonaute, N-terminal domainF: EUF08368ECOD (1.6)
APiwi_piwi-like_ProArke4ncbA6 A: a/b three-layered sandwichesX: Middle domain in Argonaute homologs (From Topology)H: Middle domain in Argonaute homologs (From Topology)T: Middle domain in Argonaute homologsF: Piwi_piwi-like_ProArkECOD (1.6)
APiwi_C_1e4ncbA4 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Piwi_C_1ECOD (1.6)
BEUF07576e4ncbB1 A: beta barrelsX: SH3H: SH3T: SH3F: EUF07576ECOD (1.6)
BEUF08364e4ncbB4 A: a+b two layersX: Alpha-beta plaitsH: Argonaute, N-terminal domain (From Topology)T: Argonaute, N-terminal domainF: EUF08364ECOD (1.6)
BEUF08368e4ncbB5 A: a+b two layersX: Alpha-beta plaitsH: Argonaute, N-terminal domain (From Topology)T: Argonaute, N-terminal domainF: EUF08368ECOD (1.6)
BPiwi_piwi-like_ProArke4ncbB6 A: a/b three-layered sandwichesX: Middle domain in Argonaute homologs (From Topology)H: Middle domain in Argonaute homologs (From Topology)T: Middle domain in Argonaute homologsF: Piwi_piwi-like_ProArkECOD (1.6)
BPiwi_C_1e4ncbB3 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Piwi_C_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF22472Argonaute, N-terminal domain (Ago_N_2)Argonaute, N-terminal domainThis domain is found at the N-terminal end of Protein argonaute from Thermus thermophilus (Ago), a site-specific DNA-guided endoRNase organised into four domain: N (this entry), PAZ (Pfam:PF18309), Mid and PIWI (Pfam:PF02171). This domain shows a mix ...This domain is found at the N-terminal end of Protein argonaute from Thermus thermophilus (Ago), a site-specific DNA-guided endoRNase organised into four domain: N (this entry), PAZ (Pfam:PF18309), Mid and PIWI (Pfam:PF02171). This domain shows a mixed alpha-beta structure [1].
Domain
A, B
PF22474Argonaute, middle domain (Ago_Mid)Argonaute, middle domainThis domain is found at the N-terminal end of Protein argonaute from Thermus thermophilus (Ago), a site-specific DNA-guided endoRNase organised into four domain: N (Pfam:PF22472), PAZ (Pfam:PF18309), Mid (this entry) and PIWI (Pfam:PF02171). This dom ...This domain is found at the N-terminal end of Protein argonaute from Thermus thermophilus (Ago), a site-specific DNA-guided endoRNase organised into four domain: N (Pfam:PF22472), PAZ (Pfam:PF18309), Mid (this entry) and PIWI (Pfam:PF02171). This domain contains residues that have been reported to be critical for cleavage activity. It folds into an alpha-beta three layered sandwich [1].
Domain
A, B
PF18309Argonaute PAZ domain (PAZ_3)Argonaute PAZ domainThis is a PAZ domain is found in argonaute present in Thermus thermophiles. Argonaute has a central role in the RNA interference pathway by mediating the maturation of small interfering RNA (siRNA) through initial degradation of the passenger strand ...This is a PAZ domain is found in argonaute present in Thermus thermophiles. Argonaute has a central role in the RNA interference pathway by mediating the maturation of small interfering RNA (siRNA) through initial degradation of the passenger strand, followed by guide-strand-mediated sequence-specific cleavage of target mRNA. The nucleic-acid-binding channel is thought to be positioned between the PAZ and PIWI domain [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Argonaute -
C,
F [auth E]
5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*AP*GP*T)-3'---
D [auth P],
H
5'-D(*TP*AP*TP*AP*CP*AP*AP*CP*C)-3'---
E [auth D]5'-D(*TP*AP*TP*AP*CP*AP*AP*CP*CP*TP*AP*CP*TP*AP*CP*CP*TP*CP*G)-3'---
G [auth F]5'-D(P*TP*AP*CP*TP*AP*CP*CP*TP*CP*G)-3'---

InterPro: Protein Family Classification InterPro Database Homepage