4O8R
Crystal structure of orotidine 5'-monophosphate decarboxylase from methanobacterium thermoautotrophicum complexed with 5,6-dihydrouridine 5'-monophosphate
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8033549 | 3000216 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8033549 | 3000216 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8033549 | 3000216 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8033549 | 3000216 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8033549 | 3000216 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8033549 | 3000216 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8033549 | 3000216 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8033549 | 3000216 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8033549 | 3000216 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8033549 | 3000216 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8033549 | 3000216 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8033549 | 3000216 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | Ribulose-phoshate binding barrel | 8033549 | 3000216 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | OMPdecase | e4o8rA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: OMPdecase | ECOD (1.6) |
B | OMPdecase | e4o8rB1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: OMPdecase | ECOD (1.6) |
C | OMPdecase | e4o8rC1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: OMPdecase | ECOD (1.6) |
D | OMPdecase | e4o8rD1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: OMPdecase | ECOD (1.6) |
E | OMPdecase | e4o8rE1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: OMPdecase | ECOD (1.6) |
F | OMPdecase | e4o8rF1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: OMPdecase | ECOD (1.6) |
G | OMPdecase | e4o8rG1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: OMPdecase | ECOD (1.6) |
H | OMPdecase | e4o8rH1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: OMPdecase | ECOD (1.6) |
I | OMPdecase | e4o8rI1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: OMPdecase | ECOD (1.6) |
J | OMPdecase | e4o8rJ1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: OMPdecase | ECOD (1.6) |
K | OMPdecase | e4o8rK1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: OMPdecase | ECOD (1.6) |
L | OMPdecase | e4o8rL1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: OMPdecase | ECOD (1.6) |
M | OMPdecase | e4o8rM1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: OMPdecase | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00215 | Orotidine 5'-phosphate decarboxylase / HUMPS family (OMPdecase) | Orotidine 5'-phosphate decarboxylase / HUMPS family | This family includes Orotidine 5'-phosphate decarboxylase enzymes EC:4.1.1.23 that are involved in the final step of pyrimidine biosynthesis. The family also includes enzymes such as hexulose-6-phosphate synthase. This family appears to be distantly ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR047595 | Orotidine 5'-phosphate decarboxylase, archaeal | Family | |
IPR018089 | Orotidine 5'-phosphate decarboxylase, active site | Active Site | |
IPR011060 | Ribulose-phosphate binding barrel | Homologous Superfamily | |
IPR013785 | Aldolase-type TIM barrel | Homologous Superfamily | |
IPR001754 | Orotidine 5'-phosphate decarboxylase domain | Domain | |
IPR014732 | Orotidine 5'-phosphate decarboxylase | Family |