4O8R

Crystal structure of orotidine 5'-monophosphate decarboxylase from methanobacterium thermoautotrophicum complexed with 5,6-dihydrouridine 5'-monophosphate


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad4o8ra_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus ) [TaxId: 145262 ], SCOPe (2.08)
Bd4o8rb_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus ) [TaxId: 145262 ], SCOPe (2.08)
Cd4o8rc_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus ) [TaxId: 145262 ], SCOPe (2.08)
Dd4o8rd_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus ) [TaxId: 145262 ], SCOPe (2.08)
Ed4o8re_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus ) [TaxId: 145262 ], SCOPe (2.08)
Fd4o8rf_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus ) [TaxId: 145262 ], SCOPe (2.08)
Gd4o8rg_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus ) [TaxId: 145262 ], SCOPe (2.08)
Hd4o8rh_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus ) [TaxId: 145262 ], SCOPe (2.08)
Id4o8ri_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus ) [TaxId: 145262 ], SCOPe (2.08)
Jd4o8rj_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus ) [TaxId: 145262 ], SCOPe (2.08)
Kd4o8rk_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus ) [TaxId: 145262 ], SCOPe (2.08)
Ld4o8rl_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus ) [TaxId: 145262 ], SCOPe (2.08)
Md4o8rm_ Alpha and beta proteins (a/b) TIM beta/alpha-barrel Ribulose-phoshate binding barrel Decarboxylase automated matches (Methanothermobacter thermautotrophicus ) [TaxId: 145262 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyRibulose-phoshate binding barrel 8033549 3000216 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AOMPdecasee4o8rA1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
BOMPdecasee4o8rB1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
COMPdecasee4o8rC1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
DOMPdecasee4o8rD1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
EOMPdecasee4o8rE1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
FOMPdecasee4o8rF1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
GOMPdecasee4o8rG1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
HOMPdecasee4o8rH1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
IOMPdecasee4o8rI1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
JOMPdecasee4o8rJ1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
KOMPdecasee4o8rK1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
LOMPdecasee4o8rL1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)
MOMPdecasee4o8rM1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: OMPdecaseECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF00215Orotidine 5'-phosphate decarboxylase / HUMPS family (OMPdecase)Orotidine 5'-phosphate decarboxylase / HUMPS familyThis family includes Orotidine 5'-phosphate decarboxylase enzymes EC:4.1.1.23 that are involved in the final step of pyrimidine biosynthesis. The family also includes enzymes such as hexulose-6-phosphate synthase. This family appears to be distantly ...This family includes Orotidine 5'-phosphate decarboxylase enzymes EC:4.1.1.23 that are involved in the final step of pyrimidine biosynthesis. The family also includes enzymes such as hexulose-6-phosphate synthase. This family appears to be distantly related to Pfam:PF00834.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Orotidine 5'-phosphate decarboxylase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR047595Orotidine 5'-phosphate decarboxylase, archaealFamily
A, B, C, D, E
IPR018089Orotidine 5'-phosphate decarboxylase, active siteActive Site
A, B, C, D, E
IPR011060Ribulose-phosphate binding barrelHomologous Superfamily
A, B, C, D, E
IPR013785Aldolase-type TIM barrelHomologous Superfamily
A, B, C, D, E
IPR001754Orotidine 5'-phosphate decarboxylase domainDomain
A, B, C, D, E
IPR014732Orotidine 5'-phosphate decarboxylaseFamily