4OD5 | pdb_00004od5

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	e4od5E1	A: DEATH domain	X: 6-phosphogluconate dehydrogenase C-terminal domain-like	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: Peptidase_S8	F:	ECOD (20:10:01)
F	e4od5F1	A: DEATH domain	X: 6-phosphogluconate dehydrogenase C-terminal domain-like	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: Peptidase_S8	F:	ECOD (20:10:01)
D	e4od5D1	A: DEATH domain	X: 6-phosphogluconate dehydrogenase C-terminal domain-like	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: Peptidase_S8	F:	ECOD (20:10:01)
C	e4od5C1	A: DEATH domain	X: 6-phosphogluconate dehydrogenase C-terminal domain-like	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: Peptidase_S8	F:	ECOD (20:10:01)
B	e4od5B1	A: DEATH domain	X: 6-phosphogluconate dehydrogenase C-terminal domain-like	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: Peptidase_S8	F:	ECOD (20:10:01)
A	e4od5A1	A: DEATH domain	X: 6-phosphogluconate dehydrogenase C-terminal domain-like	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: Peptidase_S8	F:	ECOD (20:10:01)

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	1.10.357.140	Mainly Alpha	Orthogonal Bundle	Tetracycline Repressor	domain 2	CATH (4.3.0)
E	1.20.120.1780	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	UbiA prenyltransferase	CATH (4.3.0)
F	1.10.357.140	Mainly Alpha	Orthogonal Bundle	Tetracycline Repressor	domain 2	CATH (4.3.0)
F	1.20.120.1780	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	UbiA prenyltransferase	CATH (4.3.0)
D	1.10.357.140	Mainly Alpha	Orthogonal Bundle	Tetracycline Repressor	domain 2	CATH (4.3.0)
D	1.20.120.1780	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	UbiA prenyltransferase	CATH (4.3.0)
C	1.10.357.140	Mainly Alpha	Orthogonal Bundle	Tetracycline Repressor	domain 2	CATH (4.3.0)
C	1.20.120.1780	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	UbiA prenyltransferase	CATH (4.3.0)
B	1.10.357.140	Mainly Alpha	Orthogonal Bundle	Tetracycline Repressor	domain 2	CATH (4.3.0)
B	1.20.120.1780	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	UbiA prenyltransferase	CATH (4.3.0)
A	1.10.357.140	Mainly Alpha	Orthogonal Bundle	Tetracycline Repressor	domain 2	CATH (4.3.0)
A	1.20.120.1780	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	UbiA prenyltransferase	CATH (4.3.0)

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF01040	UbiA prenyltransferase family (UbiA)	UbiA prenyltransferase family	-	Family

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	4-hydroxybenzoate octaprenyltransferase	transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity cation binding ion binding binding metal ion binding small molecule binding	-	cell periphery cellular anatomical structure plasma membrane membrane

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR006371	Polyprenyltransferase UbiA-like	Family
A, B, C, D, E A, B, C, D, E, F	IPR044878	UbiA prenyltransferase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR000537	UbiA prenyltransferase	Family
A, B, C, D, E A, B, C, D, E, F	IPR039653	Prenyltransferase	Family

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D, E A, B, C, D, E, F	OPM	Transmembrane	Alpha-helical polytopic	Transmembrane prenyltransferases	UbiA prenyltransferases

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F	PDBTM	Annotated as membrane protein by PDBTM

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F	MemProtMD	Annotated as membrane protein by MemProtMD

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D, E A, B, C, D, E, F	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	UbiA Prenyltransferases	UbiA homolog with bound substrate

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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