4OHY
C. Elegans Clp1 bound to ssRNA dinucleotide GC, AMP-PNP, and Mg2+(inhibited substrate bound state)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Clp1 N-terminal domain-like | 8045805 | 4004697 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Clp1 PNK domain-like | 8045807 | 4004698 | SCOP2 (2022-06-29) |
A | SCOP2 Family | mRNA cleavage and polyadenylation factor CLP1, C-terminal domain-like | 8048771 | 4006213 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | cAMP-binding domain-like | 8091494 | 3000084 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Simibi-like P-loop NTPases | 8091493 | 3002018 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Clp1 C-terminal domain-like | 8091492 | 3002513 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Clp1 | e4ohyA2 | A: beta barrels | X: Protein CLP1 C-terminal domain (From Topology) | H: Protein CLP1 C-terminal domain (From Topology) | T: Protein CLP1 C-terminal domain | F: Clp1 | ECOD (1.6) |
A | CLP1_N | e4ohyA3 | A: beta sandwiches | X: jelly-roll | H: Protein CLP1 jelly-roll domain (From Topology) | T: Protein CLP1 jelly-roll domain | F: CLP1_N | ECOD (1.6) |
A | CLP1_P | e4ohyA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: CLP1_P | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.1030 | Mainly Beta | Sandwich | Jelly Rolls | Clp1, DNA binding domain | CATH (4.3.0) |
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
A | 2.40.30.330 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF06807 | Pre-mRNA cleavage complex II protein Clp1 (Clp1) | Pre-mRNA cleavage complex II protein Clp1 | - | Family | |
PF16573 | N-terminal beta-sandwich domain of polyadenylation factor (CLP1_N) | N-terminal beta-sandwich domain of polyadenylation factor | - | Family | |
PF16575 | mRNA cleavage and polyadenylation factor CLP1 P-loop (CLP1_P) | mRNA cleavage and polyadenylation factor CLP1 P-loop | CLP1_P is the P-loop carrying domain of Clp1 mRNA cleavage and polyadenylation factor, Clp1, proteins in eukaryotes. Clp1 is essential for 3'-end processing of mRNAs. This region carries the P-loop suggesting it is the region that binds adenine or g ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR032324 | Clp1, N-terminal beta-sandwich domain | Domain | |
IPR032319 | Polyribonucleotide 5'-hydroxyl-kinase Clp1, P-loop domain | Domain | |
IPR038238 | Clp1, C-terminal domain superfamily | Homologous Superfamily | |
IPR038239 | Clp1, N-terminal beta-sandwich domain superfamily | Homologous Superfamily | |
IPR045116 | Polyribonucleotide 5-hydroxyl-kinase Clp1/Grc3 | Family | |
IPR010655 | Pre-mRNA cleavage complex subunit Clp1, C-terminal | Domain | |
IPR028606 | Polyribonucleotide 5-hydroxyl-kinase Clp1 | Family | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |