4OQW | pdb_00004oqw

Crystal structure of mCardinal far-red fluorescent protein

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4oqwa1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	Bubble-tip anemone (Entacmaea quadricolor ) [TaxId: 6118 ],	SCOPe (2.08)
A	d4oqwa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Bubble-tip anemone (Entacmaea quadricolor ) [TaxId: 6118 ],	SCOPe (2.08)
B	d4oqwb1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	Bubble-tip anemone (Entacmaea quadricolor ) [TaxId: 6118 ],	SCOPe (2.08)
B	d4oqwb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Bubble-tip anemone (Entacmaea quadricolor ) [TaxId: 6118 ],	SCOPe (2.08)
C	d4oqwc_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	Bubble-tip anemone (Entacmaea quadricolor ) [TaxId: 6118 ],	SCOPe (2.08)
D	d4oqwd1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	Bubble-tip anemone (Entacmaea quadricolor ) [TaxId: 6118 ],	SCOPe (2.08)
D	d4oqwd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Bubble-tip anemone (Entacmaea quadricolor ) [TaxId: 6118 ],	SCOPe (2.08)
E	d4oqwe1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	Bubble-tip anemone (Entacmaea quadricolor ) [TaxId: 6118 ],	SCOPe (2.08)
E	d4oqwe2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Bubble-tip anemone (Entacmaea quadricolor ) [TaxId: 6118 ],	SCOPe (2.08)
F	d4oqwf_	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	Bubble-tip anemone (Entacmaea quadricolor ) [TaxId: 6118 ],	SCOPe (2.08)
G	d4oqwg1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	Bubble-tip anemone (Entacmaea quadricolor ) [TaxId: 6118 ],	SCOPe (2.08)
G	d4oqwg2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Bubble-tip anemone (Entacmaea quadricolor ) [TaxId: 6118 ],	SCOPe (2.08)
H	d4oqwh1	Alpha and beta proteins (a+b)	GFP-like	GFP-like	Fluorescent proteins	automated matches	Bubble-tip anemone (Entacmaea quadricolor ) [TaxId: 6118 ],	SCOPe (2.08)
H	d4oqwh2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Bubble-tip anemone (Entacmaea quadricolor ) [TaxId: 6118 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	GFP-like	8083490	3000576	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GFP-like	8083490	3000576	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GFP-like	8083490	3000576	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GFP-like	8083490	3000576	SCOP2B (2022-06-29)
E	SCOP2 Family	Fluorescent proteins	8083489	4001049	SCOP2 (2022-06-29)
E	SCOP2 Superfamily	GFP-like	8083490	3000576	SCOP2 (2022-06-29)
F	SCOP2B Superfamily	GFP-like	8083490	3000576	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	GFP-like	8083490	3000576	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	GFP-like	8083490	3000576	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	ZP-N	e4oqwA1	A: alpha bundles	X: Single-stranded left-handed beta-helix	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ZP-N	ECOD (develop294)
B	ZP-N	e4oqwB1	A: alpha bundles	X: Single-stranded left-handed beta-helix	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ZP-N	ECOD (develop294)
C	ZP-N	e4oqwC1	A: alpha bundles	X: Single-stranded left-handed beta-helix	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ZP-N	ECOD (develop294)
D	ZP-N	e4oqwD1	A: alpha bundles	X: Single-stranded left-handed beta-helix	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ZP-N	ECOD (develop294)
E	ZP-N	e4oqwE1	A: alpha bundles	X: Single-stranded left-handed beta-helix	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ZP-N	ECOD (develop294)
F	ZP-N	e4oqwF1	A: alpha bundles	X: Single-stranded left-handed beta-helix	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ZP-N	ECOD (develop294)
G	ZP-N	e4oqwG1	A: alpha bundles	X: Single-stranded left-handed beta-helix	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ZP-N	ECOD (develop294)
H	ZP-N	e4oqwH1	A: alpha bundles	X: Single-stranded left-handed beta-helix	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ZP-N	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
B	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
C	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
D	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
E	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
F	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
G	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)
H	2.40.155.10	Mainly Beta	Beta Barrel	Green Fluorescent Protein	Green fluorescent protein	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Fluorescent protein FP480	-	bioluminescence metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011584	Green fluorescent protein-related	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR009017	Green fluorescent protein	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C, D, E A, B, C, D, E, F, G, H	MLY	Parent Component: LYS RESID: AA0075 PSI-MOD : N6,N6-dimethyl-L-lysine MOD:00084
A, B, C, D, E A, B, C, D, E, F, G, H	NRQ	Parent Component: MET, TYR, GLY RESID: AA0075 , AA0379 PSI-MOD : N6,N6-dimethyl-L-lysine MOD:00084 , 2-imino-methionine 5-imidazolinone glycine MOD:00384

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.