4PDD | pdb_00004pdd

CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM POLAROMONAS SP JS666 (Bpro_0088, TARGET EFI-510167) BOUND TO D-ERYTHRONATE

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d4pddc1	Alpha and beta proteins (a/b)	Periplasmic binding protein-like II	Periplasmic binding protein-like II	automated matches	automated matches	(Polaromonas sp. JS666 ) [TaxId: 296591 ],	SCOPe (2.08)
C	d4pddc2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Polaromonas sp. JS666 ) [TaxId: 296591 ],	SCOPe (2.08)
B	d4pddb1	Alpha and beta proteins (a/b)	Periplasmic binding protein-like II	Periplasmic binding protein-like II	automated matches	automated matches	(Polaromonas sp. JS666 ) [TaxId: 296591 ],	SCOPe (2.08)
B	d4pddb2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Polaromonas sp. JS666 ) [TaxId: 296591 ],	SCOPe (2.08)
A	d4pdda1	Alpha and beta proteins (a/b)	Periplasmic binding protein-like II	Periplasmic binding protein-like II	automated matches	automated matches	(Polaromonas sp. JS666 ) [TaxId: 296591 ],	SCOPe (2.08)
A	d4pdda2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Polaromonas sp. JS666 ) [TaxId: 296591 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	PGI	e4pddC1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: PGI	ECOD (develop294)
B	PGI	e4pddB1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: PGI	ECOD (develop294)
A	SBP_bac_1	e4pddA1	A: alpha bundles	X: Rossmann-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: SBP_bac_1	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.40.190.170	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (4.3.0)
B	3.40.190.170	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (4.3.0)
A	3.40.190.170	Alpha Beta	3-Layer(aba) Sandwich	D-Maltodextrin-Binding Protein	domain 2	CATH (4.3.0)

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C	PCA	Parent Component: GLN RESID: AA0031 PSI-MOD : 2-pyrrolidone-5-carboxylic acid (Gln) MOD:00040 , 2-pyrrolidone-5-carboxylic acid (Glu) MOD:00420

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.