4QFU

Crystal structure of a glycoside hydrolase family 5 (BVU_2644) from Bacteroides vulgatus ATCC 8482 at 1.90 A resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J	SCOP2B Superfamily	(Trans)glycosidases	8092272	3000313	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092271	3001528	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	(Trans)glycosidases	8092272	3000313	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092271	3001528	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092271	3001528	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	(Trans)glycosidases	8092272	3000313	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	(Trans)glycosidases	8092272	3000313	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092271	3001528	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	(Trans)glycosidases	8092272	3000313	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092271	3001528	SCOP2B (2022-06-29)
D	SCOP2 Family	BVU_2644 C-terminal domain-like	8048077	4005945	SCOP2 (2022-06-29)
D	SCOP2 Family	GH5 catalytic domain-like	8048376	4006076	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	Glycosyl hydrolase domain-like	8092271	3001528	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	(Trans)glycosidases	8092272	3000313	SCOP2 (2022-06-29)
E	SCOP2B Superfamily	(Trans)glycosidases	8092272	3000313	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092271	3001528	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092271	3001528	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	(Trans)glycosidases	8092272	3000313	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092271	3001528	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	(Trans)glycosidases	8092272	3000313	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092271	3001528	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	(Trans)glycosidases	8092272	3000313	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	(Trans)glycosidases	8092272	3000313	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092271	3001528	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092271	3001528	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	(Trans)glycosidases	8092272	3000313	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J	Collagen_bind_2	e4qfuJ2	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycosyl hydrolase domain (From Topology)	T: Glycosyl hydrolase domain	F: Collagen_bind_2	ECOD (1.6)
J	DUF4038	e4qfuJ1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: DUF4038	ECOD (1.6)
K	Collagen_bind_2	e4qfuK2	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycosyl hydrolase domain (From Topology)	T: Glycosyl hydrolase domain	F: Collagen_bind_2	ECOD (1.6)
K	DUF4038	e4qfuK1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: DUF4038	ECOD (1.6)
A	Collagen_bind_2	e4qfuA1	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycosyl hydrolase domain (From Topology)	T: Glycosyl hydrolase domain	F: Collagen_bind_2	ECOD (1.6)
A	DUF4038	e4qfuA2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: DUF4038	ECOD (1.6)
B	Collagen_bind_2	e4qfuB2	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycosyl hydrolase domain (From Topology)	T: Glycosyl hydrolase domain	F: Collagen_bind_2	ECOD (1.6)
B	DUF4038	e4qfuB1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: DUF4038	ECOD (1.6)
C	Collagen_bind_2	e4qfuC2	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycosyl hydrolase domain (From Topology)	T: Glycosyl hydrolase domain	F: Collagen_bind_2	ECOD (1.6)
C	DUF4038	e4qfuC1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: DUF4038	ECOD (1.6)
D	Collagen_bind_2	e4qfuD1	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycosyl hydrolase domain (From Topology)	T: Glycosyl hydrolase domain	F: Collagen_bind_2	ECOD (1.6)
D	DUF4038	e4qfuD2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: DUF4038	ECOD (1.6)
E	Collagen_bind_2	e4qfuE2	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycosyl hydrolase domain (From Topology)	T: Glycosyl hydrolase domain	F: Collagen_bind_2	ECOD (1.6)
E	DUF4038	e4qfuE1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: DUF4038	ECOD (1.6)
F	Collagen_bind_2	e4qfuF2	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycosyl hydrolase domain (From Topology)	T: Glycosyl hydrolase domain	F: Collagen_bind_2	ECOD (1.6)
F	DUF4038	e4qfuF1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: DUF4038	ECOD (1.6)
G	Collagen_bind_2	e4qfuG1	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycosyl hydrolase domain (From Topology)	T: Glycosyl hydrolase domain	F: Collagen_bind_2	ECOD (1.6)
G	DUF4038	e4qfuG2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: DUF4038	ECOD (1.6)
H	Collagen_bind_2	e4qfuH2	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycosyl hydrolase domain (From Topology)	T: Glycosyl hydrolase domain	F: Collagen_bind_2	ECOD (1.6)
H	DUF4038	e4qfuH1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: DUF4038	ECOD (1.6)
I	Collagen_bind_2	e4qfuI1	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycosyl hydrolase domain (From Topology)	T: Glycosyl hydrolase domain	F: Collagen_bind_2	ECOD (1.6)
I	DUF4038	e4qfuI2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: DUF4038	ECOD (1.6)
L	Collagen_bind_2	e4qfuL2	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycosyl hydrolase domain (From Topology)	T: Glycosyl hydrolase domain	F: Collagen_bind_2	ECOD (1.6)
L	DUF4038	e4qfuL1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: DUF4038	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
K	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
A	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
B	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
C	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
D	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
E	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
F	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
G	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
H	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
I	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
L	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF12904	Putative collagen-binding domain of a collagenase (Collagen_bind_2)	Putative collagen-binding domain of a collagenase	This domain is likely to be the collagen-binding domain of a family of bacterial collagenase enzymes. It is the C-terminal part of the PDB:3kzs structure determined from Swiss:Q8A905 (information derived from TOPSAN).	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF13204	Protein of unknown function (DUF4038) (DUF4038)	Protein of unknown function (DUF4038)	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR024749	Putative collagen-binding domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR025277	Apiosidase-like, catalytic domain	Domain