4RED | pdb_00004red

Crystal structure of human AMPK alpha1 KD-AID with K43A mutation

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	UBA-like	8090061	3001235	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Protein kinase-like (PK-like)	8081561	3000066	SCOP2B (2022-06-29)
A	SCOP2 Family	MARK4 variant UBA domain-like	8067070	4007155	SCOP2 (2022-06-29)
A	SCOP2 Family	Protein kinases catalytic domain-like	8081560	4003661	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	UBA-like	8090061	3001235	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Protein kinase-like (PK-like)	8081561	3000066	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e4redB1	A: Rubredoxin-like	X: Rubredoxin-related	H: Rubredoxin-related	T: Peptidase_M99_C	F:	ECOD (20:10:01)
A		e4redA1	A: OB-fold	X: Rubredoxin-related	H: Rubredoxin-related	T: DNA_pol_B	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.200.20	Alpha Beta	2-Layer Sandwich	Phosphorylase Kinase	domain 1	CATH (utative)
B	1.10.510.10	Mainly Alpha	Orthogonal Bundle	Transferase(Phosphotransferase)	domain 1	CATH (utative)
A	3.30.200.20	Alpha Beta	2-Layer Sandwich	Phosphorylase Kinase	domain 1	CATH (utative)
A	1.10.510.10	Mainly Alpha	Orthogonal Bundle	Transferase(Phosphotransferase)	domain 1	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF21147	AMP-activated protein kinase, alpha subunit, autoinhibitory domain (AMPK_alpha_AID)	AMP-activated protein kinase, alpha subunit, autoinhibitory domain	This domain is found in the catalytic subunit (alpha) of the enzymatic complex AMP-activated protein kinase (AMPK). This protein is organised into an N-terminal kinase domain (KD, Pfam:PF00069) and a regulatory C-terminus, which contains an autoinhib ...	This domain is found in the catalytic subunit (alpha) of the enzymatic complex AMP-activated protein kinase (AMPK). This protein is organised into an N-terminal kinase domain (KD, Pfam:PF00069) and a regulatory C-terminus, which contains an autoinhibitory domain (AID, this entry). This domain can form a compact domain that stabilizes the KD and binds to CBS-2 of the gamma-subunit [1-7].	Domain
A, B	PF00069	Protein kinase domain (Pkinase)	Protein kinase domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	5'-AMP-activated protein kinase catalytic subunit alpha-1	protein serine/threonine kinase activity [hydroxymethylglutaryl-CoA reductase (NADPH)] kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding protein serine/threonine kinase activity [hydroxymethylglutaryl-CoA reductase (NADPH)] kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein-containing complex binding cation binding metal ion binding cyclic nucleotide-dependent protein kinase activity cAMP-dependent protein kinase activity histone H2B kinase activity histone H2BS36 kinase activity histone modifying activity histone kinase activity AMP-activated protein kinase activity tau-protein kinase activity cytoskeletal protein binding protein binding tau protein binding chromatin binding protein serine kinase activity	regulation of cellular process regulation of mitochondrial transcription positive regulation of DNA-templated transcription regulation of mitochondrial gene expression positive regulation of biological process RNA metabolic process mitochondrial gene expression positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process positive regulation of metabolic process regulation of RNA metabolic process regulation of cellular process regulation of mitochondrial transcription positive regulation of DNA-templated transcription regulation of mitochondrial gene expression positive regulation of biological process RNA metabolic process mitochondrial gene expression positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process positive regulation of metabolic process regulation of RNA metabolic process positive regulation of biosynthetic process positive regulation of mitochondrial transcription positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression nucleobase-containing compound biosynthetic process mitochondrial transcription macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process mitochondrial RNA metabolic process regulation of DNA-templated transcription regulation of metabolic process catabolic process autophagy process utilizing autophagic mechanism response to stimulus response to chemical response to nitrogen compound response to purine-containing compound response to caffeine response to alkaloid cellular response to stimulus response to oxidative stress cellular response to chemical stimulus cellular response to stress response to stress cellular response to oxidative stress cellular response to chemical stress response to ketone response to prostaglandin response to lipid response to endogenous stimulus response to alcohol cellular response to prostaglandin stimulus response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to endogenous stimulus cellular response to prostaglandin E stimulus cellular response to alcohol response to hormone cellular response to lipid response to prostaglandin E cellular response to ketone cellular response to hormone stimulus cellular response to metal ion response to metal ion cellular response to calcium ion response to calcium ion cellular response to nutrient levels response to nutrient levels response to starvation cellular response to starvation cellular response to ethanol response to ethanol localization cellular localization macromolecule localization intracellular protein localization localization within membrane protein localization to membrane cellular response to xenobiotic stimulus response to xenobiotic stimulus positive regulation of autophagy regulation of catabolic process regulation of autophagy positive regulation of catabolic process cellular homeostasis neuron cellular homeostasis homeostatic process ribonucleotide catabolic process pyridine nucleotide catabolic process aerobic respiration oxoacid metabolic process carbohydrate catabolic process carbohydrate derivative metabolic process organophosphate catabolic process regulation of generation of precursor metabolites and energy positive regulation of phosphate metabolic process nucleoside phosphate catabolic process organic acid metabolic process regulation of ATP metabolic process regulation of purine nucleotide catabolic process positive regulation of nucleotide catabolic process regulation of small molecule metabolic process glycolytic process regulation of nucleotide metabolic process phosphate-containing compound metabolic process pyridine-containing compound metabolic process small molecule metabolic process purine ribonucleotide catabolic process phosphorus metabolic process nucleoside phosphate metabolic process nicotinamide nucleotide metabolic process pyruvate metabolic process regulation of carbohydrate catabolic process positive regulation of phosphorus metabolic process purine nucleoside diphosphate metabolic process purine-containing compound catabolic process nucleotide metabolic process regulation of purine nucleotide metabolic process nucleobase-containing compound catabolic process positive regulation of ATP metabolic process nucleoside diphosphate metabolic process purine nucleoside diphosphate catabolic process nucleoside diphosphate catabolic process regulation of phosphorus metabolic process regulation of nucleotide catabolic process positive regulation of carbohydrate metabolic process nucleoside triphosphate metabolic process monocarboxylic acid metabolic process purine ribonucleotide metabolic process pyridine-containing compound catabolic process ribose phosphate metabolic process cellular respiration ATP metabolic process energy derivation by oxidation of organic compounds positive regulation of nucleotide metabolic process positive regulation of purine nucleotide catabolic process purine nucleotide metabolic process ribonucleotide metabolic process nucleobase-containing small molecule metabolic process purine ribonucleoside triphosphate metabolic process ribonucleoside diphosphate metabolic process ribonucleoside diphosphate catabolic process regulation of carbohydrate metabolic process nucleotide catabolic process purine nucleoside triphosphate metabolic process carbohydrate metabolic process purine nucleotide catabolic process carbohydrate derivative catabolic process positive regulation of glycolytic process ADP catabolic process carboxylic acid metabolic process generation of precursor metabolites and energy regulation of glycolytic process purine-containing compound metabolic process positive regulation of purine nucleotide metabolic process ADP metabolic process organophosphate metabolic process purine ribonucleoside diphosphate metabolic process positive regulation of small molecule metabolic process purine ribonucleoside diphosphate catabolic process lipid biosynthetic process lipid metabolic process rhythmic process circadian rhythm regulation of circadian rhythm negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death cellular response to glucose stimulus intracellular glucose homeostasis response to hexose cellular response to carbohydrate stimulus response to monosaccharide response to carbohydrate chemical homeostasis response to glucose glucose homeostasis carbohydrate homeostasis cellular response to hexose stimulus intracellular chemical homeostasis cellular response to monosaccharide stimulus response to activity cold acclimation response to abiotic stimulus response to cold response to temperature stimulus regulation of steroid biosynthetic process regulation of cholesterol biosynthetic process regulation of cholesterol metabolic process steroid metabolic process regulation of lipid metabolic process sterol metabolic process cholesterol metabolic process alcohol metabolic process positive regulation of lipid metabolic process steroid biosynthetic process secondary alcohol biosynthetic process regulation of alcohol biosynthetic process small molecule biosynthetic process regulation of steroid metabolic process cholesterol biosynthetic process positive regulation of cholesterol biosynthetic process secondary alcohol metabolic process positive regulation of steroid biosynthetic process sterol biosynthetic process positive regulation of lipid biosynthetic process regulation of sterol biosynthetic process alcohol biosynthetic process positive regulation of cholesterol metabolic process positive regulation of steroid metabolic process regulation of lipid biosynthetic process positive regulation of alcohol biosynthetic process positive regulation of sterol biosynthetic process multicellular organismal process multicellular organismal-level homeostasis energy homeostasis regulation of localization regulation of transport transport regulation of vesicle-mediated transport establishment of localization vesicle-mediated transport cell population proliferation positive regulation of cell population proliferation regulation of cell population proliferation fatty acid homeostasis lipid homeostasis protein localization to organelle protein localization to lipid droplet response to ionizing radiation response to radiation response to gamma radiation cell surface receptor signaling pathway signaling cell communication signal transduction Wnt signaling pathway negative regulation of metabolic process negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of macromolecule metabolic process regulation of muscle tissue development regulation of developmental process skeletal muscle tissue development positive regulation of skeletal muscle tissue development regulation of skeletal muscle tissue development striated muscle tissue development muscle structure development positive regulation of developmental process skeletal muscle organ development positive regulation of muscle organ development anatomical structure development regulation of multicellular organismal process muscle tissue development muscle organ development developmental process animal organ development positive regulation of striated muscle tissue development regulation of striated muscle tissue development tissue development positive regulation of muscle tissue development regulation of muscle organ development positive regulation of multicellular organismal process positive regulation of gene expression cellular response to glucose starvation response to decreased oxygen levels cellular response to oxygen levels cellular response to hypoxia cellular response to decreased oxygen levels response to hypoxia response to oxygen levels cellular component organization cellular component disassembly organelle organization organelle disassembly lipid droplet disassembly lipid droplet organization cellular component organization or biogenesis regulation of vascular permeability system process circulatory system process vascular process in circulatory system regulation of biological quality blood circulation protein localization to cell periphery protein localization to plasma membrane negative regulation of hepatocyte apoptotic process regulation of epithelial cell apoptotic process epithelial cell apoptotic process regulation of hepatocyte apoptotic process negative regulation of epithelial cell apoptotic process hepatocyte apoptotic process monosaccharide metabolic process hexose metabolic process glucose metabolic process cellular response to nitrogen compound negative regulation of signaling response to peptide hormone regulation of signal transduction insulin receptor signaling pathway regulation of cellular response to insulin stimulus negative regulation of cell communication cell surface receptor protein tyrosine kinase signaling pathway enzyme-linked receptor protein signaling pathway regulation of signaling negative regulation of response to stimulus regulation of insulin receptor signaling pathway cellular response to peptide hormone stimulus negative regulation of signal transduction negative regulation of cellular response to insulin stimulus regulation of response to stimulus negative regulation of insulin receptor signaling pathway response to insulin regulation of cell communication cellular response to insulin stimulus negative regulation of intracellular signal transduction intracellular signal transduction negative regulation of TOR signaling regulation of intracellular signal transduction TOR signaling regulation of TOR signaling response to light stimulus response to UV negative regulation of glucosylceramide biosynthetic process sphingolipid biosynthetic process regulation of glucosylceramide biosynthetic process negative regulation of lipid biosynthetic process cellular component biogenesis glycosylceramide metabolic process glycosphingolipid metabolic process liposaccharide metabolic process negative regulation of ceramide biosynthetic process ceramide biosynthetic process negative regulation of lipid metabolic process glycolipid metabolic process regulation of sphingolipid biosynthetic process regulation of ceramide biosynthetic process negative regulation of sphingolipid biosynthetic process ceramide metabolic process carbohydrate derivative biosynthetic process glucosylceramide biosynthetic process sphingolipid metabolic process glycolipid biosynthetic process glucosylceramide metabolic process regulation of cellular component biogenesis glycosphingolipid biosynthetic process negative regulation of catabolic process lipid catabolic process regulation of lipid catabolic process negative regulation of lipid catabolic process regulation of protein modification process macromolecule deacylation protein deacetylation negative regulation of tubulin deacetylation regulation of protein deacetylation tubulin deacetylation negative regulation of protein modification process protein metabolic process protein modification process negative regulation of protein metabolic process regulation of protein metabolic process regulation of tubulin deacetylation protein deacylation macromolecule modification response to estrogen connective tissue development adipose tissue development positive regulation of adipose tissue development regulation of adipose tissue development regulation of cellular component organization stress granule assembly organelle assembly membraneless organelle assembly regulation of organelle organization cellular component assembly regulation of organelle assembly regulation of stress granule assembly calcium-mediated signaling intracellular signaling cassette CAMKK-AMPK signaling cascade negative regulation of ferroptosis regulation of ferroptosis ferroptosis regulation of cytoskeleton organization microtubule cytoskeleton organization regulation of microtubule-based process microtubule-based process regulation of microtubule cytoskeleton organization cytoskeleton organization cellular response to hydrogen peroxide response to reactive oxygen species response to hydrogen peroxide cellular response to reactive oxygen species fatty acid metabolic process monocarboxylic acid biosynthetic process organic acid biosynthetic process fatty acid biosynthetic process carboxylic acid biosynthetic process adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains lymphocyte mediated immunity regulation of immune effector process T cell mediated immunity regulation of response to biotic stimulus positive regulation of leukocyte mediated immunity positive regulation of response to biotic stimulus positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains immune response to tumor cell positive regulation of lymphocyte mediated immunity regulation of response to tumor cell response to biotic stimulus positive regulation of response to stimulus T cell mediated immune response to tumor cell regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of T cell mediated immune response to tumor cell positive regulation of immune response leukocyte mediated immunity regulation of immune system process positive regulation of immune effector process positive regulation of adaptive immune response positive regulation of immune system process regulation of T cell mediated immunity response to tumor cell positive regulation of immune response to tumor cell immune response regulation of adaptive immune response regulation of immune response to tumor cell adaptive immune response immune effector process positive regulation of T cell mediated immune response to tumor cell regulation of leukocyte mediated immunity regulation of lymphocyte mediated immunity immune system process positive regulation of T cell mediated immunity regulation of immune response positive regulation of response to tumor cell regulation of protein localization positive regulation of protein localization lipid modification fatty acid oxidation lipid oxidation negative regulation of TORC1 signaling regulation of TORC1 signaling TORC1 signaling behavior motor behavior regulation of leukocyte activation regulation of cell activation positive regulation of leukocyte cell-cell adhesion lymphocyte activation leukocyte cell-cell adhesion leukocyte activation positive regulation of cell-cell adhesion positive regulation of lymphocyte activation positive regulation of cell activation cell adhesion cell-cell adhesion T cell activation positive regulation of leukocyte activation regulation of cell-cell adhesion positive regulation of T cell activation positive regulation of cell adhesion regulation of cell adhesion cell activation regulation of T cell activation regulation of leukocyte cell-cell adhesion regulation of lymphocyte activation	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body cellular anatomical structure nucleoplasm organelle lumen organelle membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen cytoplasm cytosol cilium plasma membrane bounded cell projection ciliary basal body cell projection microtubule organizing center cytoskeleton microtubule cytoskeleton cell periphery apical part of cell membrane plasma membrane plasma membrane region apical plasma membrane protein kinase complex transferase complex, transferring phosphorus-containing groups protein-containing complex catalytic complex transferase complex intracellular protein-containing complex nucleotide-activated protein kinase complex somatodendritic compartment dendrite dendritic tree neuron projection chromatin chromosome cell body neuronal cell body axon

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR000719	Protein kinase domain	Domain
A, B	IPR039137	5'-AMP-activated protein kinase alpha 1 catalytic subunit, C-terminal	Domain
A, B	IPR049020	PRKAA1/2, autoinhibitory domain	Domain
A, B	IPR017441	Protein kinase, ATP binding site	Binding Site
A, B	IPR032270	AMPK, C-terminal adenylate sensor domain	Domain
A, B	IPR008271	Serine/threonine-protein kinase, active site	Active Site
A, B	IPR028375	KA1 domain/Ssp2, C-terminal	Homologous Superfamily
A, B	IPR028797	PRKAA1, UBA-like autoinhibitory domain	Domain
A, B	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q13131	glucose intolerance Insulin Resistance ovarian cancer precancerous condition alopecia breast cancer gastric carcinoma glioblastoma Helicobacter pylori infectious disease malignant ependymoma oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm gastric cardia carcinoma hereditary diffuse gastric adenocarcinoma juvenile dermatomyositis glucose intolerance Insulin Resistance ovarian cancer precancerous condition alopecia breast cancer gastric carcinoma glioblastoma Helicobacter pylori infectious disease malignant ependymoma oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm gastric cardia carcinoma hereditary diffuse gastric adenocarcinoma juvenile dermatomyositis osteosarcoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia astrocytic tumor gastric cancer gastric neoplasm leukopenia

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.