Crystal Structure of P Domain of Hawaii Norovirus (GII.1)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d4roxb1 | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | automated matches | automated matches | (Norovirus Hu/GII.1/7EK/Hawaii/1971/USA ) [TaxId: 1208060 ], | SCOPe (2.08) |
| B | d4roxb2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Norovirus Hu/GII.1/7EK/Hawaii/1971/USA ) [TaxId: 1208060 ], | SCOPe (2.08) |
| A | d4roxa1 | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | automated matches | automated matches | (Norovirus Hu/GII.1/7EK/Hawaii/1971/USA ) [TaxId: 1208060 ], | SCOPe (2.08) |
| A | d4roxa2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Norovirus Hu/GII.1/7EK/Hawaii/1971/USA ) [TaxId: 1208060 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | e4roxB1 | A: TIM beta/alpha-barrel | X: TIM barrels | H: TIM barrels | T: Ribosomal_L2_C | F: | ECOD (20:10:01) | |
| A | e4roxA1 | A: TIM beta/alpha-barrel | X: TIM barrels | H: TIM barrels | T: Ribosomal_L2_C | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 2.40.510.10 | Mainly Beta | Beta Barrel | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | CATH (4.3.0) |
| B | 2.40.30.120 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
| A | 2.40.510.10 | Mainly Beta | Beta Barrel | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | CATH (4.3.0) |
| A | 2.40.30.120 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Capsid protein VP1 | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR029053 | Viral coat protein subunit | Homologous Superfamily | |
| IPR004005 | Calicivirus coat protein | Domain | |
| IPR013643 | Calicivirus coat protein C-terminal | Domain | |
| IPR033703 | Picornavirus/Calicivirus coat protein | Domain |
