Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| D [auth AD] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8083400 | 3001473 | SCOP2B (2022-06-29) |
| G [auth AG] | SCOP2B Superfamily | Ribosomal protein S7 | 8077979 | 3000799 | SCOP2B (2022-06-29) |
| H [auth AH] | SCOP2B Superfamily | Ribosomal protein S8 | 8079059 | 3000709 | SCOP2B (2022-06-29) |
| I [auth AI] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082661 | 3000100 | SCOP2B (2022-06-29) |
| K [auth AK] | SCOP2B Superfamily | Translational machinery components | 8035368 | 3000571 | SCOP2B (2022-06-29) |
| L [auth AL] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8106545 | 3000135 | SCOP2B (2022-06-29) |
| M [auth AM] | SCOP2B Superfamily | S13-like H2TH domain | 8098358 | 3000053 | SCOP2B (2022-06-29) |
| N [auth AN] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052568 | 3000068 | SCOP2B (2022-06-29) |
| O [auth AO] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8032375 | 3001284 | SCOP2B (2022-06-29) |
| Q [auth AQ] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8059276 | 3000135 | SCOP2B (2022-06-29) |
| S [auth AS] | SCOP2B Superfamily | Ribosomal protein S19 | 8103915 | 3000686 | SCOP2B (2022-06-29) |
| U [auth AU] | SCOP2B Superfamily | Ribosomal protein S21 | 8053090 | 3002159 | SCOP2B (2022-06-29) |
| W [auth AW] | SCOP2B Superfamily | EF-G C-terminal domain-like | 8092475 | 3001287 | SCOP2B (2022-06-29) |
| W [auth AW] | SCOP2B Superfamily | EF-G C-terminal domain-like | 8092474 | 3001287 | SCOP2B (2022-06-29) |
| W [auth AW] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8092476 | 3002022 | SCOP2B (2022-06-29) |
| W [auth AW] | SCOP2B Superfamily | EF-Tu post-G domain-like | 8092477 | 3002024 | SCOP2B (2022-06-29) |
| Y [auth B0] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8096338 | 3000539 | SCOP2B (2022-06-29) |
| Z [auth B1] | SCOP2B Superfamily | L28p-like | 8035424 | 3001966 | SCOP2B (2022-06-29) |
| AA [auth B2] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8096370 | 3000713 | SCOP2B (2022-06-29) |
| BA [auth B3] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8096372 | 3001378 | SCOP2B (2022-06-29) |
| CA [auth B4] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096380 | 3001320 | SCOP2B (2022-06-29) |
| DA [auth B5] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096362 | 3001320 | SCOP2B (2022-06-29) |
| FA [auth B7] | SCOP2B Superfamily | L35p-like | 8035388 | 3000790 | SCOP2B (2022-06-29) |
| GA [auth B8] | SCOP2B Superfamily | Ribosomal protein L36 | 8035391 | 3001346 | SCOP2B (2022-06-29) |
| KA [auth BD] | SCOP2B Superfamily | Translational proteins | 8032955 | 3000811 | SCOP2B (2022-06-29) |
| LA [auth BE] | SCOP2B Superfamily | Ribosomal protein L4 | 8096356 | 3001146 | SCOP2B (2022-06-29) |
| NA [auth BG] | SCOP2B Superfamily | Ribosomal protein L6 | 8035397 | 3000724 | SCOP2B (2022-06-29) |
| NA [auth BG] | SCOP2B Superfamily | Ribosomal protein L6 | 8035398 | 3000724 | SCOP2B (2022-06-29) |
| PA [auth BI] | SCOP2B Superfamily | Ribosomal L11/L12e N-terminal domain-like | 8032963 | 3000950 | SCOP2B (2022-06-29) |
| PA [auth BI] | SCOP2B Superfamily | Ribosomal protein L11, C-terminal domain | 8032961 | 3001186 | SCOP2B (2022-06-29) |
| UA [auth BN] | SCOP2B Superfamily | Ribosomal protein L13 | 8096350 | 3001134 | SCOP2B (2022-06-29) |
| VA [auth BO] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8103358 | 3000433 | SCOP2B (2022-06-29) |
| WA [auth BP] | SCOP2 Family | Ribosomal proteins L15p and L18e | 8070552 | 4003555 | SCOP2 (2022-06-29) |
| WA [auth BP] | SCOP2 Superfamily | Ribosomal proteins L15p and L18e | 8070553 | 3001045 | SCOP2 (2022-06-29) |
| XA [auth BQ] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8096366 | 3000884 | SCOP2B (2022-06-29) |
| YA [auth BR] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8035409 | 3000995 | SCOP2B (2022-06-29) |
| AB [auth BT] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096364 | 3000334 | SCOP2B (2022-06-29) |
| CB [auth BV] | SCOP2B Superfamily | l21p-like | 8096354 | 3002005 | SCOP2B (2022-06-29) |
| DB [auth BW] | SCOP2B Superfamily | Ribosomal protein L22 | 8096336 | 3001078 | SCOP2B (2022-06-29) |
| EB [auth BX] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8035415 | 3000210 | SCOP2B (2022-06-29) |
| GB [auth BZ] | SCOP2B Superfamily | Ribosomal protein L25-like | 8042538 | 3001161 | SCOP2B (2022-06-29) |
| F [auth AF] | SCOP2B Superfamily | Ribosomal protein S6 | 8066495 | 3001323 | SCOP2B (2022-06-29) |
| FB [auth BY] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096358 | 3000334 | SCOP2B (2022-06-29) |
| BB [auth BU] | SCOP2B Superfamily | Ribosomal protein L20 | 8096382 | 3000563 | SCOP2B (2022-06-29) |
| ZA [auth BS] | SCOP2B Superfamily | Translational machinery components | 8032969 | 3000571 | SCOP2B (2022-06-29) |
| OA [auth BH] | SCOP2B Superfamily | Ribosomal protein L10-like | 8079773 | 3000665 | SCOP2B (2022-06-29) |
| MA [auth BF] | SCOP2B Superfamily | RL5-like | 8096352 | 3001709 | SCOP2B (2022-06-29) |
| JA [auth BC] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8035394 | 3000135 | SCOP2B (2022-06-29) |
| JA [auth BC] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8035393 | 3000334 | SCOP2B (2022-06-29) |
| B [auth AB] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063838 | 3001397 | SCOP2B (2022-06-29) |
| P [auth AP] | SCOP2B Superfamily | Ribosomal protein S16 | 8106547 | 3000680 | SCOP2B (2022-06-29) |
| J [auth AJ] | SCOP2B Superfamily | Ribosomal protein S10 | 8102681 | 3001336 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C [auth AC] | e4v85AC1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| D [auth AD] | e4v85AD1 | A: beta-propeller-like | X: beta-propeller | H: Nucleic acid-binding protein | T: Cellulase | F: | ECOD (20:10:01) | |
| E [auth AE] | e4v85AE1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| G [auth AG] | e4v85AG1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| H [auth AH] | e4v85AH1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| I [auth AI] | e4v85AI1 | A: beta-propeller-like | X: beta-propeller | H: Nucleic acid-binding protein | T: Cellulase | F: | ECOD (20:10:01) | |
| K [auth AK] | e4v85AK1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| L [auth AL] | e4v85AL1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| M [auth AM] | e4v85AM1 | A: beta-propeller-like | X: beta-propeller | H: Nucleic acid-binding protein | T: Cellulase | F: | ECOD (20:10:01) | |
| N [auth AN] | e4v85AN1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| O [auth AO] | e4v85AO1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| Q [auth AQ] | e4v85AQ1 | A: beta-propeller-like | X: beta-propeller | H: Nucleic acid-binding protein | T: Cellulase | F: | ECOD (20:10:01) | |
| R [auth AR] | e4v85AR1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| S [auth AS] | e4v85AS1 | A: beta-propeller-like | X: beta-propeller | H: Nucleic acid-binding protein | T: Cellulase | F: | ECOD (20:10:01) | |
| U [auth AU] | e4v85AU1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| W [auth AW] | e4v85AW1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| Y [auth B0] | e4v85B01 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| Z [auth B1] | e4v85B11 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| AA [auth B2] | e4v85B21 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| BA [auth B3] | e4v85B31 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| CA [auth B4] | e4v85B41 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| DA [auth B5] | e4v85B51 | A: HSP20-like | X: profilin-like | H: C-terminal domain in DHH phosphoesterases | T: PemK_toxin | F: | ECOD (20:10:01) | |
| EA [auth B6] | e4v85B61 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| FA [auth B7] | e4v85B71 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| GA [auth B8] | e4v85B81 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| KA [auth BD] | e4v85BD1 | A: HSP20-like | X: profilin-like | H: C-terminal domain in DHH phosphoesterases | T: PemK_toxin | F: | ECOD (20:10:01) | |
| LA [auth BE] | e4v85BE1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| NA [auth BG] | e4v85BG1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| PA [auth BI] | e4v85BI1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| RA [auth BK] | e4v85BK1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| SA [auth BL] | e4v85BL1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| TA [auth BM] | e4v85BM1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| QA [auth BJ] | e4v85BJ1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| UA [auth BN] | e4v85BN1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| VA [auth BO] | e4v85BO1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| WA [auth BP] | e4v85BP1 | A: HSP20-like | X: profilin-like | H: C-terminal domain in DHH phosphoesterases | T: PemK_toxin | F: | ECOD (20:10:01) | |
| XA [auth BQ] | e4v85BQ1 | A: HSP20-like | X: HSP20-like chaperones | H: HSP20-like chaperones | T: Dynamin_N | F: | ECOD (20:10:01) | |
| YA [auth BR] | e4v85BR1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| AB [auth BT] | e4v85BT1 | A: HSP20-like | X: HSP20-like chaperones | H: HSP20-like chaperones | T: Dynamin_N | F: | ECOD (20:10:01) | |
| CB [auth BV] | e4v85BV1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| DB [auth BW] | e4v85BW1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| EB [auth BX] | e4v85BX1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| GB [auth BZ] | e4v85BZ1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| F [auth AF] | e4v85AF1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| FB [auth BY] | e4v85BY1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| BB [auth BU] | e4v85BU1 | A: HSP20-like | X: profilin-like | H: C-terminal domain in DHH phosphoesterases | T: PemK_toxin | F: | ECOD (20:10:01) | |
| ZA [auth BS] | e4v85BS1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| OA [auth BH] | e4v85BH1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| MA [auth BF] | e4v85BF1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| JA [auth BC] | e4v85BC1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| T [auth AT] | e4v85AT1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| B [auth AB] | e4v85AB1 | A: Immunoglobulin-like beta-sandwich | X: Immunoglobulin-related | H: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | T: FlaF_Ig-like | F: | ECOD (20:10:01) | |
| P [auth AP] | e4v85AP1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| J [auth AJ] | e4v85AJ1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| C [auth AC] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| C [auth AC] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| D [auth AD] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| D [auth AD] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| E [auth AE] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| E [auth AE] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| G [auth AG] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| H [auth AH] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| I [auth AI] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| K [auth AK] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| L [auth AL] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| M [auth AM] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| N [auth AN] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| O [auth AO] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| Q [auth AQ] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| S [auth AS] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| W [auth AW] | PF00009 | Elongation factor Tu GTP binding domain (GTP_EFTU) | Elongation factor Tu GTP binding domain | This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. | Domain |
| W [auth AW] | PF03144 | Elongation factor Tu domain 2 (GTP_EFTU_D2) | Elongation factor Tu domain 2 | Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ... | Domain |
| W [auth AW] | PF16658 | Class II release factor RF3, C-terminal domain (RF3_C) | Class II release factor RF3, C-terminal domain | Domain | |
| Z [auth B1] | PF00830 | Ribosomal L28 family (Ribosomal_L28) | Ribosomal L28 family | - | Family |
| AA [auth B2] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| BA [auth B3] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| CA [auth B4] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |
| DA [auth B5] | PF00471 | Ribosomal protein L33 (Ribosomal_L33) | Ribosomal protein L33 | - | Family |
| EA [auth B6] | PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family |
| FA [auth B7] | PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family |
| GA [auth B8] | PF00444 | Ribosomal protein L36 (Ribosomal_L36) | Ribosomal protein L36 | Domain | |
| KA [auth BD] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| LA [auth BE] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| NA [auth BG] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| PA [auth BI] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
| PA [auth BI] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | Domain | |
| QA [auth BJ], RA [auth BK], SA [auth BL], TA [auth BM] | PF16320 | Ribosomal protein L7/L12 dimerisation domain (Ribosomal_L12_N) | Ribosomal protein L7/L12 dimerisation domain | This is the N-terminal dimerisation domain of ribosomal protein L7/L12 [1]. | Domain |
| UA [auth BN] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| VA [auth BO] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| WA [auth BP] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| XA [auth BQ] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| YA [auth BR] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
| AB [auth BT] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
| CB [auth BV] | PF00829 | Ribosomal prokaryotic L21 protein (Ribosomal_L21p) | Ribosomal prokaryotic L21 protein | - | Family |
| DB [auth BW] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| EB [auth BX] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| GB [auth BZ] | PF01386 | Ribosomal L25p family (Ribosomal_L25p) | Ribosomal L25p family | Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. | Domain |
| F [auth AF] | PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | Domain | |
| FB [auth BY] | PF17136 | Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24) | Large ribosomal subunit protein uL24, C-terminal domain | This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ... | Domain |
| FB [auth BY] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| BB [auth BU] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
| OA [auth BH] | PF00466 | Ribosomal protein L10 (Ribosomal_L10) | Ribosomal protein L10 | - | Family |
| MA [auth BF] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| MA [auth BF] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| JA [auth BC] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| JA [auth BC] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
| B [auth AB] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| P [auth AP] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |
| J [auth AJ] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |














