Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| I [auth AA] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8061280 | 3001397 | SCOP2B (2022-06-29) |
| EC [auth CV] | SCOP2B Superfamily | EF-Tu post-G domain-like | 8019793 | 3002024 | SCOP2B (2022-06-29) |
| EC [auth CV] | SCOP2B Superfamily | Initiation factor IF2/eIF5b domain 3-like | 8019796 | 3001128 | SCOP2B (2022-06-29) |
| TB [auth Bl] | SCOP2B Superfamily | Ribosomal protein L39e | 8078549 | 3001756 | SCOP2B (2022-06-29) |
| SB [auth Bk] | SCOP2B Superfamily | Ribosomal L38e protein-like | 8053562 | 3002206 | SCOP2B (2022-06-29) |
| RB [auth Bj] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8080044 | 3001320 | SCOP2B (2022-06-29) |
| QB [auth Bi] | SCOP2B Superfamily | Ribosomal protein L36e | 8053115 | 3002161 | SCOP2B (2022-06-29) |
| OB [auth Bg] | SCOP2B Superfamily | Ribosomal protein L34e-like | 8053547 | 3002203 | SCOP2B (2022-06-29) |
| NB [auth Bf] | SCOP2B Superfamily | Translational proteins | 8087451 | 3000811 | SCOP2B (2022-06-29) |
| KB [auth Bc] | SCOP2B Superfamily | L30e-like | 8039862 | 3001739 | SCOP2B (2022-06-29) |
| JB [auth Bb] | SCOP2B Superfamily | Ribosomal protein L29e | 8053045 | 3002157 | SCOP2B (2022-06-29) |
| IB [auth Ba] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8077127 | 3001045 | SCOP2B (2022-06-29) |
| HB [auth BZ] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053046 | 3000334 | SCOP2B (2022-06-29) |
| GB [auth BY] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8076760 | 3000334 | SCOP2B (2022-06-29) |
| FB [auth BX] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8095962 | 3000210 | SCOP2B (2022-06-29) |
| DB [auth BV] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8103364 | 3000433 | SCOP2B (2022-06-29) |
| CB [auth BU] | SCOP2B Superfamily | 60S Ribosomal protein L22e | 8053058 | 3002158 | SCOP2B (2022-06-29) |
| YA [auth BQ] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8095970 | 3001045 | SCOP2B (2022-06-29) |
| XA [auth BP] | SCOP2B Superfamily | Ribosomal protein L22 | 8076708 | 3001078 | SCOP2B (2022-06-29) |
| E [auth A4] | SCOP2B Superfamily | Ribosomal protein S30e-like | 8053451 | 3002190 | SCOP2B (2022-06-29) |
| VA [auth BN] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8082481 | 3000210 | SCOP2B (2022-06-29) |
| TA [auth BL] | SCOP2B Superfamily | Ribosomal protein L13e-like | 8053159 | 3002162 | SCOP2B (2022-06-29) |
| RA [auth BJ] | SCOP2B Superfamily | RL5-like | 8073884 | 3001709 | SCOP2B (2022-06-29) |
| QA [auth BI] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8079407 | 3000884 | SCOP2B (2022-06-29) |
| OA [auth BG] | SCOP2B Superfamily | L30e-like | 8063962 | 3001739 | SCOP2B (2022-06-29) |
| NA [auth BF] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8052917 | 3001378 | SCOP2B (2022-06-29) |
| NA [auth BF] | SCOP2B Superfamily | Ribosomal L30p/L7e protein, N-terminal domain-lke | 8052916 | 3002152 | SCOP2B (2022-06-29) |
| D [auth A3] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052569 | 3000068 | SCOP2B (2022-06-29) |
| MA [auth BE] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053109 | 3000334 | SCOP2B (2022-06-29) |
| LA [auth BD] | SCOP2B Superfamily | Translational machinery components | 8052875 | 3000571 | SCOP2B (2022-06-29) |
| KA [auth BC] | SCOP2B Superfamily | Ribosomal protein L4 | 8052816 | 3001146 | SCOP2B (2022-06-29) |
| KA [auth BC] | SCOP2B Superfamily | 60S ribosomal protein L4 C-terminal domain-like | 8052815 | 3002143 | SCOP2B (2022-06-29) |
| JA [auth BB] | SCOP2B Superfamily | Translational proteins | 8078363 | 3000811 | SCOP2B (2022-06-29) |
| HA [auth AZ] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8059235 | 3000034 | SCOP2B (2022-06-29) |
| EA [auth AW] | SCOP2B Superfamily | Ribosomal protein S8 | 8096922 | 3000709 | SCOP2B (2022-06-29) |
| DA [auth AV] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053136 | 3000068 | SCOP2B (2022-06-29) |
| C [auth A2] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8063430 | 3000135 | SCOP2B (2022-06-29) |
| CA [auth AU] | SCOP2B Superfamily | Ribosomal protein S10 | 8098648 | 3001336 | SCOP2B (2022-06-29) |
| AA [auth AS] | SCOP2B Superfamily | S13-like H2TH domain | 8098450 | 3000053 | SCOP2B (2022-06-29) |
| Y [auth AQ] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8103366 | 3000100 | SCOP2B (2022-06-29) |
| X [auth AP] | SCOP2B Superfamily | Ribosomal protein S19 | 8086076 | 3000686 | SCOP2B (2022-06-29) |
| W [auth AO] | SCOP2B Superfamily | Translational machinery components | 8095805 | 3000571 | SCOP2B (2022-06-29) |
| V [auth AN] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8052974 | 3001284 | SCOP2B (2022-06-29) |
| V [auth AN] | SCOP2B Superfamily | Homeodomain-like | 8052973 | 3000001 | SCOP2B (2022-06-29) |
| U [auth AM] | SCOP2B Superfamily | L30e-like | 8096946 | 3001739 | SCOP2B (2022-06-29) |
| T [auth AL] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052738 | 3000135 | SCOP2B (2022-06-29) |
| T [auth AL] | SCOP2B Superfamily | Ribosomal S17 N-terminal domain-like | 8052736 | 3002138 | SCOP2B (2022-06-29) |
| S [auth AK] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8055713 | 3000034 | SCOP2B (2022-06-29) |
| Q [auth AI] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8053083 | 3000433 | SCOP2B (2022-06-29) |
| O [auth AG] | SCOP2B Superfamily | GS N-terminal domain-like | 8053173 | 3000408 | SCOP2B (2022-06-29) |
| N [auth AF] | SCOP2B Superfamily | Ribosomal protein S7 | 8065993 | 3000799 | SCOP2B (2022-06-29) |
| M [auth AE] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052759 | 3000135 | SCOP2B (2022-06-29) |
| M [auth AE] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052760 | 3000334 | SCOP2B (2022-06-29) |
| M [auth AE] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8052758 | 3001473 | SCOP2B (2022-06-29) |
| J [auth AB] | SCOP2B Superfamily | Ribosomal S3Ae-like | 8053211 | 3002166 | SCOP2B (2022-06-29) |
| A [auth A0] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8093614 | 3000068 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth AA] | e4v8zAA1 | A: Immunoglobulin-like beta-sandwich | X: Immunoglobulin-related | H: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | T: FlaF_Ig-like | F: | ECOD (20:10:01) | |
| EC [auth CV] | e4v8zCV1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| H [auth A7] | e4v8zA71 | A: CXXC domain-like | X: CXXC domain | H: CXXC domain | T: Helicase_C | F: | ECOD (20:10:01) | |
| XB [auth Bq] | e4v8zBq1 | A: Type II ABC importer transmembrane domain fold | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: KAsynt_C_assoc | F: | ECOD (20:10:01) | |
| WB [auth Bo] | e4v8zBo1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| VB [auth Bn] | e4v8zBn1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| UB [auth Bm] | e4v8zBm1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| TB [auth Bl] | e4v8zBl1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| SB [auth Bk] | e4v8zBk1 | A: Alpha-beta plaits | X: Pseudouridine synthase | H: Pseudouridine synthase | T: MG2 | F: | ECOD (20:10:01) | |
| RB [auth Bj] | e4v8zBj1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| G [auth A6] | e4v8zA61 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| QB [auth Bi] | e4v8zBi1 | A: Type II ABC importer transmembrane domain fold | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: KAsynt_C_assoc | F: | ECOD (20:10:01) | |
| PB [auth Bh] | e4v8zBh1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| OB [auth Bg] | e4v8zBg1 | A: Alpha-beta plaits | X: Pseudouridine synthase | H: Pseudouridine synthase | T: MG2 | F: | ECOD (20:10:01) | |
| NB [auth Bf] | e4v8zBf1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| MB [auth Be] | e4v8zBe1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| LB [auth Bd] | e4v8zBd1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| KB [auth Bc] | e4v8zBc1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| JB [auth Bb] | e4v8zBb1 | A: Alpha-beta plaits | X: Pseudouridine synthase | H: Pseudouridine synthase | T: MG2 | F: | ECOD (20:10:01) | |
| IB [auth Ba] | e4v8zBa1 | A: P-loop domains-like | X: Cas7-related | H: CRISPR-associated protein Cas7f/Csy3 | T: CE2_N | F: | ECOD (20:10:01) | |
| HB [auth BZ] | e4v8zBZ1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| F [auth A5] | e4v8zA51 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| GB [auth BY] | e4v8zBY1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| FB [auth BX] | e4v8zBX1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| EB [auth BW] | e4v8zBW1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| DB [auth BV] | e4v8zBV1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| CB [auth BU] | e4v8zBU1 | A: Type II ABC importer transmembrane domain fold | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: KAsynt_C_assoc | F: | ECOD (20:10:01) | |
| BB [auth BT] | e4v8zBT1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| AB [auth BS] | e4v8zBS1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| ZA [auth BR] | e4v8zBR1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| YA [auth BQ] | e4v8zBQ1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| XA [auth BP] | e4v8zBP1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| E [auth A4] | e4v8zA41 | A: Type II ABC importer transmembrane domain fold | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: KAsynt_C_assoc | F: | ECOD (20:10:01) | |
| WA [auth BO] | e4v8zBO1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| VA [auth BN] | e4v8zBN1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| UA [auth BM] | e4v8zBM1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| TA [auth BL] | e4v8zBL1 | A: Alpha-beta plaits | X: Pseudouridine synthase | H: Pseudouridine synthase | T: MG2 | F: | ECOD (20:10:01) | |
| RA [auth BJ] | e4v8zBJ1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| QA [auth BI] | e4v8zBI1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| PA [auth BH] | e4v8zBH1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| OA [auth BG] | e4v8zBG1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| NA [auth BF] | e4v8zBF1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| D [auth A3] | e4v8zA31 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| MA [auth BE] | e4v8zBE1 | A: Immunoglobulin-like beta-sandwich | X: Immunoglobulin-related | H: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | T: FlaF_Ig-like | F: | ECOD (20:10:01) | |
| LA [auth BD] | e4v8zBD1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| KA [auth BC] | e4v8zBC2 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| KA [auth BC] | e4v8zBC3 | A: Immunoglobulin-like beta-sandwich | X: Immunoglobulin-related | H: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | T: | F: | ECOD (20:10:01) | |
| JA [auth BB] | e4v8zBB1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| IA [auth BA] | e4v8zBA1 | A: TIM beta/alpha-barrel | X: TIM barrels | H: TIM barrels | T: AAA_16 | F: | ECOD (20:10:01) | |
| HA [auth AZ] | e4v8zAZ1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| GA [auth AY] | e4v8zAY1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| FA [auth AX] | e4v8zAX1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| EA [auth AW] | e4v8zAW1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| DA [auth AV] | e4v8zAV1 | A: Rossmann-like | X: Rossmann-related | H: S-adenosyl-L-methionine-dependent methyltransferases | T: Fer4, Fer4_7, Fer4_10 | F: | ECOD (20:10:01) | |
| C [auth A2] | e4v8zA21 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| CA [auth AU] | e4v8zAU1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| BA [auth AT] | e4v8zAT1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| AA [auth AS] | e4v8zAS1 | A: beta-propeller-like | X: beta-propeller | H: Nucleic acid-binding protein | T: Cellulase | F: | ECOD (20:10:01) | |
| Z [auth AR] | e4v8zAR1 | A: Type II ABC importer transmembrane domain fold | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: KAsynt_C_assoc | F: | ECOD (20:10:01) | |
| Y [auth AQ] | e4v8zAQ1 | A: beta-propeller-like | X: beta-propeller | H: Nucleic acid-binding protein | T: Cellulase | F: | ECOD (20:10:01) | |
| X [auth AP] | e4v8zAP1 | A: beta-propeller-like | X: beta-propeller | H: PERK and Ire1 luminal domains | T: | F: | ECOD (20:10:01) | |
| W [auth AO] | e4v8zAO1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| V [auth AN] | e4v8zAN1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| U [auth AM] | e4v8zAM1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| T [auth AL] | e4v8zAL1 | A: beta-propeller-like | X: beta-propeller | H: Nucleic acid-binding protein | T: Cellulase | F: | ECOD (20:10:01) | |
| B [auth A1] | e4v8zA11 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| S [auth AK] | e4v8zAK1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| R [auth AJ] | e4v8zAJ1 | A: Type II ABC importer transmembrane domain fold | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: KAsynt_C_assoc | F: | ECOD (20:10:01) | |
| Q [auth AI] | e4v8zAI1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| P [auth AH] | e4v8zAH1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| O [auth AG] | e4v8zAG1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| N [auth AF] | e4v8zAF1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| M [auth AE] | e4v8zAE1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| L [auth AD] | e4v8zAD1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| K [auth AC] | e4v8zAC1 | A: Nat/Ivy | X: Acyl-CoA N-acyltransferases (Nat) | H: Acyl-CoA N-acyltransferases (Nat) | T: MoCoBD_2 | F: | ECOD (20:10:01) | |
| J [auth AB] | e4v8zAB1 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) | |
| A [auth A0] | e4v8zA01 | A: Type III secretion system domain-like | X: Antibiotic binding domain of TipA-like multidrug resistance regulators | H: Antibiotic binding domain of TipA-like multidrug resistance regulators | T: TTL, ATPgrasp_YheCD | F: | ECOD (20:10:01) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| I [auth AA] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| EC [auth CV] | PF00009 | Elongation factor Tu GTP binding domain (GTP_EFTU) | Elongation factor Tu GTP binding domain | This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. | Domain |
| EC [auth CV] | PF11987 | Translation-initiation factor 2 (IF-2) | Translation-initiation factor 2 | IF-2 is a translation initiator in each of the three main phylogenetic domains (Eukaryotes [1], Bacteria [2] and Archaea [3]). IF2 interacts with formylmethionine-tRNA, GTP, IF1, IF3 and both ribosomal subunits [2]. Through these interactions, IF2 pr ... | Domain |
| EC [auth CV] | PF14578 | Elongation factor Tu domain 4 (GTP_EFTU_D4) | Elongation factor Tu domain 4 | Elongation factor Tu consists of several structural domains, and this is usually the fourth. | Domain |
| G [auth A6] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
| HB [auth BZ] | PF01777 | Ribosomal L27e protein family (Ribosomal_L27e) | Ribosomal L27e protein family | - | Family |
| F [auth A5] | PF01599 | Ribosomal protein S27a (Ribosomal_S27) | Ribosomal protein S27a | This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ... | Domain |
| GB [auth BY] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
| GB [auth BY] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| FB [auth BX] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| EB [auth BW] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | Domain | |
| DB [auth BV] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| BB [auth BT] | PF01157 | Ribosomal protein L21e (Ribosomal_L21e) | Ribosomal protein L21e | - | Family |
| AB [auth BS] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
| ZA [auth BR] | PF01280 | Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e) | Ribosomal protein L19e, N-terminal domain | This domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| ZA [auth BR] | PF25476 | Ribosomal protein L19e, C-terminal domain (Ribosomal_L19e_C) | Ribosomal protein L19e, C-terminal domain | This domain is found at the C-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| YA [auth BQ] | PF17135 | Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) | Ribosomal protein 60S L18 and 50S L18e | - | Family |
| YA [auth BQ] | PF00466 | Ribosomal protein L10 (Ribosomal_L10) | Ribosomal protein L10 | - | Family |
| XA [auth BP] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| E [auth A4] | PF04758 | Ribosomal protein S30 (Ribosomal_S30) | Ribosomal protein S30 | - | Family |
| WA [auth BO] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |
| WA [auth BO] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| VA [auth BN] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
| UA [auth BM] | PF01020 | Ribosomal L40e family (Ribosomal_L40e) | Ribosomal L40e family | Bovine L40 has been identified as a secondary RNA binding protein [1]. L40 is fused to a ubiquitin protein [2]. | Domain |
| UA [auth BM] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |
| UA [auth BM] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| TA [auth BL] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
| TA [auth BL] | PF01294 | Ribosomal protein L13e (Ribosomal_L13e) | Ribosomal protein L13e | - | Family |
| SA [auth BK] | PF01781 | Ribosomal L38e protein family (Ribosomal_L38e) | Ribosomal L38e protein family | - | Family |
| RA [auth BJ] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| RA [auth BJ] | PF01907 | Ribosomal protein L37e (Ribosomal_L37e) | Ribosomal protein L37e | - | Family |
| RA [auth BJ] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| QA [auth BI] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| QA [auth BI] | PF01158 | Ribosomal protein L36e (Ribosomal_L36e) | Ribosomal protein L36e | - | Family |
| PA [auth BH] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| PA [auth BH] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| OA [auth BG] | PF01199 | Ribosomal protein L34e (Ribosomal_L34e) | Ribosomal protein L34e | - | Family |
| OA [auth BG] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| NA [auth BF] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| NA [auth BF] | PF01247 | Ribosomal protein L35Ae (Ribosomal_L35Ae) | Ribosomal protein L35Ae | This entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. | Domain |
| D [auth A3] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| MA [auth BE] | PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family |
| MA [auth BE] | PF01159 | Ribosomal protein L6e (Ribosomal_L6e) | Ribosomal protein L6e | - | Family |
| LA [auth BD] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
| LA [auth BD] | PF01198 | Ribosomal protein L31e (Ribosomal_L31e) | Ribosomal protein L31e | - | Family |
| LA [auth BD] | PF14204 | Ribosomal L18 C-terminal region (Ribosomal_L18_c) | Ribosomal L18 C-terminal region | This domain is the C-terminal end of ribosomal L18/L5 proteins. | Domain |
| KA [auth BC] | PF14374 | 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) | 60S ribosomal protein L4 C-terminal domain | This family is found at the very C-terminal of 60 ribosomal L4 proteins. | Domain |
| KA [auth BC] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| KA [auth BC] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| JA [auth BB] | PF01779 | Ribosomal L29e protein family (Ribosomal_L29e) | Ribosomal L29e protein family | - | Family |
| JA [auth BB] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| IA [auth BA] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| IA [auth BA] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
| IA [auth BA] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| GA [auth AY] | PF01282 | Ribosomal protein S24e (Ribosomal_S24e) | Ribosomal protein S24e | - | Family |
| FA [auth AX] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| EA [auth AW] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| DA [auth AV] | PF01249 | Ribosomal protein S21e (Ribosomal_S21e) | Ribosomal protein S21e | - | Family |
| C [auth A2] | PF01200 | Ribosomal protein S28e (Ribosomal_S28e) | Ribosomal protein S28e | Domain | |
| CA [auth AU] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| BA [auth AT] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
| AA [auth AS] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| Y [auth AQ] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| X [auth AP] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| W [auth AO] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| V [auth AN] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| U [auth AM] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| T [auth AL] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| T [auth AL] | PF16205 | Ribosomal_S17 N-terminal (Ribosomal_S17_N) | Ribosomal_S17 N-terminal | - | Family |
| B [auth A1] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |
| S [auth AK] | PF03501 | Plectin/S10 domain (S10_plectin) | Plectin/S10 domain | This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. | Domain |
| R [auth AJ] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| R [auth AJ] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| Q [auth AI] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |
| P [auth AH] | PF01251 | Ribosomal protein S7e (Ribosomal_S7e) | Ribosomal protein S7e | - | Family |
| O [auth AG] | PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family |
| N [auth AF] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| M [auth AE] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
| M [auth AE] | PF16121 | 40S ribosomal protein S4 C-terminus (40S_S4_C) | 40S ribosomal protein S4 C-terminus | - | Family |
| M [auth AE] | PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain |
| M [auth AE] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| M [auth AE] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| L [auth AD] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| L [auth AD] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| K [auth AC] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| K [auth AC] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |














