4WZ7 | pdb_00004wz7

Crystal structure of mitochondrial NADH:ubiquinone oxidoreductase from Yarrowia lipolytica.

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth 6]SCOP2 FamilyNADH-quinone oxidoreductase NDH subunit 10-like 8047845 4005844 SCOP2 (2022-06-29)
F [auth 6]SCOP2 SuperfamilyNADH-quinone oxidoreductase, subunit 11-like 8053517 3002200 SCOP2 (2022-06-29)
O [auth L]SCOP2 FamilyNADH-quinone oxidoreductase NDH subunit 11-like 8047737 4005793 SCOP2 (2022-06-29)
O [auth L]SCOP2 SuperfamilyNADH-quinone oxidoreductase, subunit 11-like 8053510 3002200 SCOP2 (2022-06-29)
N [auth K]SCOP2B SuperfamilyNqo6/HydA N-terminal domain-like 8085725 3002291 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth C]RrnaADe4wz7C1 A: alpha bundlesX: Alpha-beta plaitsH: Protease propeptides/inhibitorsT: Protease propeptides/inhibitorsF: RrnaADECOD (develop294)
H [auth B]e4wz7B1 A: alpha bundlesX: Rossmann-likeH: Glycosyl hydrolase domainT: Glycosyl hydrolase domainF:ECOD (develop294)
F [auth 6]RrnaADe4wz761 A: alpha bundlesX: Alpha-beta plaitsH: Protease propeptides/inhibitorsT: Protease propeptides/inhibitorsF: RrnaADECOD (develop294)
E [auth 5]Nucleopor_Nup85e4wz751 A: alpha bundlesX: Rossmann-likeH: Glycosyl hydrolase domainT: Glycosyl hydrolase domainF: Nucleopor_Nup85ECOD (develop294)
D [auth 4]Nucleopor_Nup85e4wz741 A: alpha bundlesX: Rossmann-likeH: Glycosyl hydrolase domainT: Glycosyl hydrolase domainF: Nucleopor_Nup85ECOD (develop294)
C [auth 3]Nucleopor_Nup85e4wz731 A: alpha bundlesX: Rossmann-likeH: Glycosyl hydrolase domainT: Glycosyl hydrolase domainF: Nucleopor_Nup85ECOD (develop294)
B [auth 2]Nucleopor_Nup85e4wz721 A: alpha bundlesX: Rossmann-likeH: Glycosyl hydrolase domainT: Glycosyl hydrolase domainF: Nucleopor_Nup85ECOD (develop294)
O [auth L]RrnaADe4wz7L1 A: alpha bundlesX: Alpha-beta plaitsH: Protease propeptides/inhibitorsT: Protease propeptides/inhibitorsF: RrnaADECOD (develop294)
N [auth K]RrnaADe4wz7K1 A: alpha bundlesX: Alpha-beta plaitsH: Protease propeptides/inhibitorsT: Protease propeptides/inhibitorsF: RrnaADECOD (develop294)
M [auth I]Nucleopor_Nup85e4wz7I1 A: alpha bundlesX: Rossmann-likeH: Glycosyl hydrolase domainT: Glycosyl hydrolase domainF: Nucleopor_Nup85ECOD (develop294)
K [auth G]RrnaADe4wz7G1 A: alpha bundlesX: Alpha-beta plaitsH: Protease propeptides/inhibitorsT: Protease propeptides/inhibitorsF: RrnaADECOD (develop294)
A [auth 1]RrnaADe4wz711 A: alpha bundlesX: Alpha-beta plaitsH: Protease propeptides/inhibitorsT: Protease propeptides/inhibitorsF: RrnaADECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
F [auth 6]PF00499NADH-ubiquinone/plastoquinone oxidoreductase chain 6 (Oxidored_q3)NADH-ubiquinone/plastoquinone oxidoreductase chain 6- Family
O [auth L]PF00420NADH-ubiquinone/plastoquinone oxidoreductase chain 4L (Oxidored_q2)NADH-ubiquinone/plastoquinone oxidoreductase chain 4L- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth C]NUCM protein---
H [auth B]NUBM protein---
G [auth A]NUAM protein---
F [auth 6]NADH-ubiquinone oxidoreductase chain 6 -
E [auth 5]NADH-ubiquinone oxidoreductase chain 5---
OB [auth BI]unknown subunits---
JB [auth BD],
LB [auth BF]		unknown subunits---
IB [auth BC]unknown subunits---
FB [auth AZ]unknown subunits---
DB [auth AX]unknown subunits---
AB [auth AU]unknown subunits---
GB [auth BA],
WA [auth AQ]		unknown subunits---
VA [auth AP],
YA [auth AS]		unknown subunits---
UA [auth AO]unknown subunits---
D [auth 4]NADH-ubiquinone oxidoreductase chain 4---
SA [auth AM]unknown subunits---
QA [auth AK],
TA [auth AN]		unknown subunits---
OA [auth AI],
RA [auth AL]		unknown subunits---
MA [auth AG]unknown subunits---
LA [auth AF]unknown subunits---
KA [auth AE]unknown subunits---
IA [auth AC],
JA [auth AD]		unknown subunits---
CB [auth AW],
GA [auth AA],
HB [auth BB],
MB [auth BG]		unknown subunits---
FA [auth Y],
XA [auth AR],
ZA [auth AT]		unknown subunits---
BB [auth AV],
EA [auth X],
NB [auth BH],
PA [auth AJ]		unknown subunits---
C [auth 3]NADH-ubiquinone oxidoreductase chain 3---
DA [auth W],
EB [auth AY],
HA [auth AB],
KB [auth BE]		unknown subunits---
CA [auth V]unknown subunits---
BA [auth U]unknown subunits---
AA [auth T],
NA [auth AH]		unknown subunits---
Z [auth S]unknown subunits---
Y [auth R]unknown subunits---
X [auth Q]unknown subunits---
W [auth P]unknown subunits---
V [auth O]unknown subunits---
U [auth N]unknown subunits---
B [auth 2]NADH dehydrogenase subunit 2---
T [auth M]unknown subunits---
S [auth J]unknown subunits---
R [auth F]unknown subunits 2---
P [auth Z],
Q [auth D]		unknown subunits 1---
O [auth L]NADH-ubiquinone oxidoreductase chain 4L
N [auth K]Subunit NUKM of protein NADH:Ubiquinone Oxidoreductase (Complex I)
M [auth I]Subunit NUIM of protein NADH:Ubiquinone Oxidoreductase (Complex I)---
L [auth H]Subunit NUHM of protein NADH:Ubiquinone Oxidoreductase (Complex I)---
K [auth G]NUGM protein---
J [auth E]39-kDa subunit---
A [auth 1]NADH-ubiquinone oxidoreductase chain 1---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F [auth 6]IPR042106NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJHomologous Superfamily
F [auth 6]IPR001457NADH:ubiquinone/plastoquinone oxidoreductase, chain 6Family
O [auth L]IPR001133NADH-ubiquinone oxidoreductase chain 4L/KFamily
O [auth L]IPR039428NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-likeFamily
N [auth K]IPR006138NADH-ubiquinone oxidoreductase, 20 Kd subunitFamily
N [auth K]IPR006137NADH:ubiquinone oxidoreductase-like, 20kDa subunitDomain

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
OPMTransmembraneAlpha-helical polytopicElectron transport chain complex I (NADH dehydrogenase) and supercomplexesH+ or Na+ translocating NADH dehydrogenase

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

ChainsResource LinkGroupSubgroupProtein
mpstrucTRANSMEMBRANE PROTEINS: ALPHA-HELICALElectron Transport Chain Complexes: Complex IMitochondrial Complex I