Crystal structure of norovirus GII.10 P domain in complex with Nano-85
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D | d4x7ed1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
| D | d4x7ed2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
| B [auth C] | d4x7ec1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
| B [auth C] | d4x7ec2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Vicugna pacos ) [TaxId: 30538 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D | e4x7eD1 | A: P-loop domains-like | X: P-loop domains-related | H: P-loop containing nucleoside triphosphate hydrolases | T: Ank, Ank_2, Ank_3, Ank_4 | F: | ECOD (20:10:01) | |
| B [auth C] | e4x7eC1 | A: P-loop domains-like | X: P-loop domains-related | H: P-loop containing nucleoside triphosphate hydrolases | T: Ank, Ank_2, Ank_3, Ank_4 | F: | ECOD (20:10:01) | |
| C [auth B] | e4x7eB1 | A: C-terminal additional helical subdomain in reovirus polymerase lambda3 | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 | T: Calici_coat_C | F: | ECOD (20:10:01) | |
| A | e4x7eA1 | A: C-terminal additional helical subdomain in reovirus polymerase lambda3 | X: C-terminal additional helical subdomain in reovirus polymerase lambda3 | H: C-terminal additional helical subdomain in reovirus polymerase lambda3 | T: Calici_coat_C | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| D | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| B [auth C] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| C [auth B] | 2.40.510.10 | Mainly Beta | Beta Barrel | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | CATH (4.3.0) |
| C [auth B] | 2.40.30.120 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
| A | 2.40.510.10 | Mainly Beta | Beta Barrel | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | CATH (4.3.0) |
| A | 2.40.30.120 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| B [auth C], D | Heavy Chain | IGHV1 | - | capsid protein | SAbDab (2026-03-13) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| B [auth C], D | Nano-85 Nanobody | - | - | - |
| A, C [auth B] | Capsid protein | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| A, C [auth B] | IPR029053 | Viral coat protein subunit | Homologous Superfamily |
| A, C [auth B] | IPR004005 | Calicivirus coat protein | Domain |
| A, C [auth B] | IPR013643 | Calicivirus coat protein C-terminal | Domain |
| A, C [auth B] | IPR033703 | Picornavirus/Calicivirus coat protein | Domain |
