4XMN
Structure of the yeast coat nucleoporin complex, space group P212121
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Coat and nuclear envelope proteins | 8054129 | 3002276 | SCOP2B (2022-06-29) |
D [auth E] | SCOP2B Superfamily | Scaffolding nucleoporins | 8090980 | 3002255 | SCOP2B (2022-06-29) |
D [auth E] | SCOP2B Superfamily | Nucleoporin beta-propeller domain | 8090978 | 3000456 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | ANAPC4_WD40_19 | e4xmnA1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_19 | ECOD (1.6) |
B | Nup96 | e4xmnB1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology) | T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain | F: Nup96 | ECOD (1.6) |
C [auth F] | Nup84_Nup100 | e4xmnF1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nucleoporin Nup84/Nup107 (From Topology) | T: Nucleoporin Nup84/Nup107 | F: Nup84_Nup100 | ECOD (1.6) |
D [auth E] | Nup160 | e4xmnE1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Nup160 | ECOD (1.6) |
D [auth E] | EUF08019 | e4xmnE2 | A: alpha arrays | X: Nucleoporin NUP120 helical domain (From Topology) | H: Nucleoporin NUP120 helical domain (From Topology) | T: Nucleoporin NUP120 helical domain | F: EUF08019 | ECOD (1.6) |
D [auth E] | KOG4521_2nd | e4xmnE3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology) | T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | F: KOG4521_2nd | ECOD (1.6) |
E [auth D] | UNK_F_TYPE | e4xmnD1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain (From Topology) | T: Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain | F: UNK_F_TYPE | ECOD (1.6) |
F [auth L] | C1-set_4 | e4xmnL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
F [auth L] | V-set | e4xmnL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
G [auth H] | C1-set_1 | e4xmnH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
G [auth H] | V-set_12 | e4xmnH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
F [auth L] | Antibody 87 | L-KAPPA | Homo sapiens (human) | IGKV1D-13*01, IGKJ1*01, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202507-0) |
G [auth H] | Antibody 87 | VH-CH1 | Homo sapiens (human) | IGHV3-21*01, IGHV3-21*02, IGHV3-64*04, IGHV3-66*01, IGHV3-66*02, IGHV3-66*04, IGHV3-74*01, IGHV3-74*02, IGHV3-23*04, IGHV3-21*04, IGHV3-21*03, IGHJ6*01, IGHJ6*02, IGHG1*01, IGHG1*02, IGHG1*04 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202507-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
F [auth L] | Light Chain | IGKV1D | Kappa | nucleoporin nup120 | SAbDab (2025-02-28) |
G [auth H] | Heavy Chain | IGHV3 | - | nucleoporin nup120 | SAbDab (2025-02-28) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |
PF12110 | Nuclear protein 96 (Nup96) | Nuclear protein 96 | Nup96 (often known by the name of its yeast homolog Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the n ... | Domain | |
C [auth F] | PF04121 | Nuclear pore protein 84 / 107 (Nup84_Nup100) | Nuclear pore protein 84 / 107 | - | Family |
D [auth E] | PF22114 | Nucleoporin NUP120, helical domain (NUP120_helical_2) | Nucleoporin NUP120, helical domain | This domain is found in Nucleoporin NUP120 from Saccharomyces cerevisiae and similar fungal sequences. NUP120 is a a component of the nuclear pore complex (NPC) involved in nuclear poly(A)+ RNA and pre-ribosome export, in GSP1 nuclear import, in NPC ... | Domain |