4XOM | pdb_00004xom

Coenzyme F420:L-glutamate ligase (FbiB) from Mycobacterium tuberculosis (C-terminal domain).

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D		e4xomD1	A: Lipocalins/Streptavidin	X: Enterocin 7A and 7B	H: Enterocin 7A and 7B	T: tRNA-synt_1c_C	F:	ECOD (20:10:01)
C		e4xomC1	A: Lipocalins/Streptavidin	X: Enterocin 7A and 7B	H: Enterocin 7A and 7B	T: tRNA-synt_1c_C	F:	ECOD (20:10:01)
B		e4xomB1	A: Lipocalins/Streptavidin	X: Enterocin 7A and 7B	H: Enterocin 7A and 7B	T: tRNA-synt_1c_C	F:	ECOD (20:10:01)
A		e4xomA1	A: Lipocalins/Streptavidin	X: Enterocin 7A and 7B	H: Enterocin 7A and 7B	T: tRNA-synt_1c_C	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.109.10	Alpha Beta	3-Layer(aba) Sandwich	NADH Oxidase	NADH Oxidase	CATH (4.3.0)
C	3.40.109.10	Alpha Beta	3-Layer(aba) Sandwich	NADH Oxidase	NADH Oxidase	CATH (4.3.0)
B	3.40.109.10	Alpha Beta	3-Layer(aba) Sandwich	NADH Oxidase	NADH Oxidase	CATH (4.3.0)
A	3.40.109.10	Alpha Beta	3-Layer(aba) Sandwich	NADH Oxidase	NADH Oxidase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00881	Nitroreductase family (Nitroreductase)	Nitroreductase family	The nitroreductase family comprises a group of FMN- or FAD-dependent and NAD(P)H-dependent enzymes able to metabolize nitrosubstituted compounds.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Coenzyme F420:L-glutamate ligase	coenzyme F420-0:L-glutamate ligase activity acid-amino acid ligase activity coenzyme F420-0 gamma-glutamyl ligase activity catalytic activity ligase activity, forming carbon-nitrogen bonds ligase activity oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor oxidoreductase activity oxidoreductase activity, acting on the CH-CH group of donors coenzyme F420-1:gamma-L-glutamate ligase activity binding guanyl nucleotide binding GTP binding nucleotide binding coenzyme F420-0:L-glutamate ligase activity acid-amino acid ligase activity coenzyme F420-0 gamma-glutamyl ligase activity catalytic activity ligase activity, forming carbon-nitrogen bonds ligase activity oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor oxidoreductase activity oxidoreductase activity, acting on the CH-CH group of donors coenzyme F420-1:gamma-L-glutamate ligase activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding metal ion binding	oxoacid metabolic process carboxylic acid metabolic process carbohydrate derivative metabolic process organic acid metabolic process organophosphate metabolic process F420-0 metabolic process phosphate-containing compound metabolic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process alditol phosphate metabolic process phosphorus metabolic process carbohydrate derivative biosynthetic process oxoacid metabolic process carboxylic acid metabolic process carbohydrate derivative metabolic process organic acid metabolic process organophosphate metabolic process F420-0 metabolic process phosphate-containing compound metabolic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process alditol phosphate metabolic process phosphorus metabolic process carbohydrate derivative biosynthetic process tricarboxylic acid metabolic process coenzyme gamma-F420-2 biosynthetic process small molecule biosynthetic process organic acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process organophosphate biosynthetic process tricarboxylic acid biosynthetic process	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR002847	Coenzyme F420:L-glutamate ligase-like domain	Domain
A, B, C, D	IPR029479	Nitroreductase	Domain
A, B, C, D	IPR008225	Coenzyme F420:L-glutamate ligase	Family
A, B, C, D	IPR023661	Bifunctional F420 biosynthesis protein FbiB	Family
A, B, C, D	IPR019943	Coenzyme F420 biosynthesis protein FbiB, C-terminal	Domain
A, B, C, D	IPR000415	Nitroreductase-like	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.