Crystal structure of RNase J complexed with UMP
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | GST_N_3 | e4xwtA1 | A: alpha bundles | X: Carbon-nitrogen hydrolase-like | H: HTH | T: winged helix domain | F: GST_N_3 | ECOD (develop294) |
| B | GST_N_3 | e4xwtB1 | A: alpha bundles | X: Carbon-nitrogen hydrolase-like | H: HTH | T: winged helix domain | F: GST_N_3 | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 3.60.15.10 | Alpha Beta | 4-Layer Sandwich | Metallo-beta-lactamase | Chain A | CATH (4.3.0) |
| A | 3.40.50.10710 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Metallo-hydrolase/oxidoreductase | CATH (4.3.0) |
| A | 3.10.20.580 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | CATH (4.3.0) | |
| B | 3.60.15.10 | Alpha Beta | 4-Layer Sandwich | Metallo-beta-lactamase | Chain A | CATH (4.3.0) |
| B | 3.40.50.10710 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Metallo-hydrolase/oxidoreductase | CATH (4.3.0) |
| B | 3.10.20.580 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR001279 | Metallo-beta-lactamase | Domain | |
| IPR055132 | Ribonuclease J, beta-CASP domain | Domain | |
| IPR011108 | Zn-dependent metallo-hydrolase, RNA specificity domain | Domain | |
| IPR004613 | Ribonuclease J | Family | |
| IPR036866 | Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | Homologous Superfamily | |
| IPR030854 | Ribonuclease J, bacteria | Family | |
| IPR041636 | Ribonuclease J, C-terminal | Domain | |
| IPR042173 | Ribonuclease J, domain 2 | Homologous Superfamily |














