4YJX | pdb_00004yjx

The structure of Agrobacterium tumefaciens ClpS2 bound to L-phenylalaninamide

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d4yjxd_	Alpha and beta proteins (a+b)	ClpS-like	ClpS-like	automated matches	automated matches	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
C	d4yjxc_	Alpha and beta proteins (a+b)	ClpS-like	ClpS-like	automated matches	automated matches	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
B	d4yjxb_	Alpha and beta proteins (a+b)	ClpS-like	ClpS-like	automated matches	automated matches	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)
A	d4yjxa_	Alpha and beta proteins (a+b)	ClpS-like	ClpS-like	automated matches	automated matches	(Agrobacterium fabrum str. C58 ) [TaxId: 176299 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	ClpS-like	8075158	3000936	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ClpS-like	8075158	3000936	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ClpS-like	8075158	3000936	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	ClpS-like	8075158	3000936	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	DUF433	e4yjxD1	A: alpha bundles	X: HTH	H: HTH	T: Three-helical HTH	F: DUF433	ECOD (develop294)
C	DUF433	e4yjxC1	A: alpha bundles	X: HTH	H: HTH	T: Three-helical HTH	F: DUF433	ECOD (develop294)
B	DUF433	e4yjxB1	A: alpha bundles	X: HTH	H: HTH	T: Three-helical HTH	F: DUF433	ECOD (develop294)
A	DUF433	e4yjxA1	A: alpha bundles	X: HTH	H: HTH	T: Three-helical HTH	F: DUF433	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.30.1390.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein L30	Chain: A,	CATH (4.3.0)
C	3.30.1390.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein L30	Chain: A,	CATH (4.3.0)
B	3.30.1390.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein L30	Chain: A,	CATH (4.3.0)
A	3.30.1390.10	Alpha Beta	2-Layer Sandwich	Ribosomal Protein L30	Chain: A,	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	ATP-dependent Clp protease adapter protein ClpS 2	-	catabolic process metabolic process cellular process primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process macromolecule catabolic process proteolysis	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR003769	Adaptor protein ClpS, core	Domain
A, B, C, D	IPR014719	Ribosomal protein bL12, C-terminal/adaptor protein ClpS-like	Homologous Superfamily
A, B, C, D	IPR022935	ATP-dependent Clp protease adaptor protein ClpS	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.