4YJY | pdb_00004yjy

Crystal structure of Type III polyketide synthase from Oryza sativa

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d4yjyb1	Alpha and beta proteins (a/b)	Thiolase-like	Thiolase-like	automated matches	automated matches	Rice (Oryza sativa Indica Group ) [TaxId: 39946 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e4yjyA1	A: TIM beta/alpha-barrel	X: omega toxin-related	H: omega toxin-related	T: Ribosomal_S2	F:	ECOD (20:10:01)
B		e4yjyB1	A: TIM beta/alpha-barrel	X: omega toxin-related	H: omega toxin-related	T: Ribosomal_S2	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)
B	3.40.47.10	Alpha Beta	3-Layer(aba) Sandwich	Peroxisomal Thiolase	Chain A, domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00195	Chalcone and stilbene synthases, N-terminal domain (Chal_sti_synt_N)	Chalcone and stilbene synthases, N-terminal domain	The C-terminal domain of Chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in this N-terminal domain.	Domain
A, B	PF02797	Chalcone and stilbene synthases, C-terminal domain (Chal_sti_synt_C)	Chalcone and stilbene synthases, C-terminal domain	This domain of chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in the N-terminal domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Chalcone synthase 1	acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity catalytic activity naringenin-chalcone synthase activity	flavonoid metabolic process flavonoid biosynthetic process biosynthetic process metabolic process cellular process polyketide biosynthetic process secondary metabolite biosynthetic process polyketide metabolic process secondary metabolic process developmental process multicellular organismal process cellular component assembly involved in morphogenesis cellular component organization cellular component biogenesis flavonoid metabolic process flavonoid biosynthetic process biosynthetic process metabolic process cellular process polyketide biosynthetic process secondary metabolite biosynthetic process polyketide metabolic process secondary metabolic process developmental process multicellular organismal process cellular component assembly involved in morphogenesis cellular component organization cellular component biogenesis anatomical structure morphogenesis multicellular organism development cellular anatomical entity morphogenesis cellular component assembly gametophyte development pollen wall assembly anatomical structure formation involved in morphogenesis anatomical structure development cellular component organization or biogenesis pollen development external encapsulating structure organization	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR001099	Chalcone/stilbene synthase, N-terminal	Domain
A, B	IPR016039	Thiolase-like	Homologous Superfamily
A, B	IPR012328	Chalcone/stilbene synthase, C-terminal	Domain
A, B	IPR011141	Polyketide synthase, type III	Family
A, B	IPR018088	Chalcone/stilbene synthase, active site	Active Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.