4Z9M | pdb_00004z9m

Crystal structure of human sarcomeric mitochondrial creatine kinase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4z9ma1	All alpha proteins	Guanido kinase N-terminal domain	Guanido kinase N-terminal domain	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d4z9ma2	Alpha and beta proteins (a+b)	Glutamine synthetase/guanido kinase	Glutamine synthetase/guanido kinase	Guanido kinase catalytic domain	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d4z9mb1	All alpha proteins	Guanido kinase N-terminal domain	Guanido kinase N-terminal domain	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d4z9mb2	Alpha and beta proteins (a+b)	Glutamine synthetase/guanido kinase	Glutamine synthetase/guanido kinase	Guanido kinase catalytic domain	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d4z9mc1	All alpha proteins	Guanido kinase N-terminal domain	Guanido kinase N-terminal domain	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d4z9mc2	Alpha and beta proteins (a+b)	Glutamine synthetase/guanido kinase	Glutamine synthetase/guanido kinase	Guanido kinase catalytic domain	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d4z9md1	All alpha proteins	Guanido kinase N-terminal domain	Guanido kinase N-terminal domain	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d4z9md2	Alpha and beta proteins (a+b)	Glutamine synthetase/guanido kinase	Glutamine synthetase/guanido kinase	Guanido kinase catalytic domain	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E	d4z9me1	All alpha proteins	Guanido kinase N-terminal domain	Guanido kinase N-terminal domain	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E	d4z9me2	Alpha and beta proteins (a+b)	Glutamine synthetase/guanido kinase	Glutamine synthetase/guanido kinase	Guanido kinase catalytic domain	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d4z9mf1	All alpha proteins	Guanido kinase N-terminal domain	Guanido kinase N-terminal domain	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d4z9mf2	Alpha and beta proteins (a+b)	Glutamine synthetase/guanido kinase	Glutamine synthetase/guanido kinase	Guanido kinase catalytic domain	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
G	d4z9mg1	All alpha proteins	Guanido kinase N-terminal domain	Guanido kinase N-terminal domain	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
G	d4z9mg2	Alpha and beta proteins (a+b)	Glutamine synthetase/guanido kinase	Glutamine synthetase/guanido kinase	Guanido kinase catalytic domain	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
H	d4z9mh1	All alpha proteins	Guanido kinase N-terminal domain	Guanido kinase N-terminal domain	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
H	d4z9mh2	Alpha and beta proteins (a+b)	Glutamine synthetase/guanido kinase	Glutamine synthetase/guanido kinase	Guanido kinase catalytic domain	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Tim44	e4z9mA1	A: alpha bundles	X: Bromodomain-like	H: HTH	T: Three-helical HTH	F: Tim44	ECOD (develop294)
B	Tim44	e4z9mB1	A: alpha bundles	X: Bromodomain-like	H: HTH	T: Three-helical HTH	F: Tim44	ECOD (develop294)
C	Tim44	e4z9mC1	A: alpha bundles	X: Bromodomain-like	H: HTH	T: Three-helical HTH	F: Tim44	ECOD (develop294)
D	Tim44	e4z9mD1	A: alpha bundles	X: Bromodomain-like	H: HTH	T: Three-helical HTH	F: Tim44	ECOD (develop294)
E	Tim44	e4z9mE1	A: alpha bundles	X: Bromodomain-like	H: HTH	T: Three-helical HTH	F: Tim44	ECOD (develop294)
F	Tim44	e4z9mF1	A: alpha bundles	X: Bromodomain-like	H: HTH	T: Three-helical HTH	F: Tim44	ECOD (develop294)
G	Tim44	e4z9mG1	A: alpha bundles	X: Bromodomain-like	H: HTH	T: Three-helical HTH	F: Tim44	ECOD (develop294)
H	Tim44	e4z9mH1	A: alpha bundles	X: Bromodomain-like	H: HTH	T: Three-helical HTH	F: Tim44	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.135.10	Mainly Alpha	Orthogonal Bundle	Transferase Creatine Kinase	Chain A, domain 1	CATH (4.3.0)
A	3.30.590.10	Alpha Beta	2-Layer Sandwich	Creatine Kinase	Chain A, domain 2	CATH (4.3.0)
B	1.10.135.10	Mainly Alpha	Orthogonal Bundle	Transferase Creatine Kinase	Chain A, domain 1	CATH (4.3.0)
B	3.30.590.10	Alpha Beta	2-Layer Sandwich	Creatine Kinase	Chain A, domain 2	CATH (4.3.0)
C	1.10.135.10	Mainly Alpha	Orthogonal Bundle	Transferase Creatine Kinase	Chain A, domain 1	CATH (4.3.0)
C	3.30.590.10	Alpha Beta	2-Layer Sandwich	Creatine Kinase	Chain A, domain 2	CATH (4.3.0)
D	1.10.135.10	Mainly Alpha	Orthogonal Bundle	Transferase Creatine Kinase	Chain A, domain 1	CATH (4.3.0)
D	3.30.590.10	Alpha Beta	2-Layer Sandwich	Creatine Kinase	Chain A, domain 2	CATH (4.3.0)
E	1.10.135.10	Mainly Alpha	Orthogonal Bundle	Transferase Creatine Kinase	Chain A, domain 1	CATH (4.3.0)
E	3.30.590.10	Alpha Beta	2-Layer Sandwich	Creatine Kinase	Chain A, domain 2	CATH (4.3.0)
F	1.10.135.10	Mainly Alpha	Orthogonal Bundle	Transferase Creatine Kinase	Chain A, domain 1	CATH (4.3.0)
F	3.30.590.10	Alpha Beta	2-Layer Sandwich	Creatine Kinase	Chain A, domain 2	CATH (4.3.0)
G	1.10.135.10	Mainly Alpha	Orthogonal Bundle	Transferase Creatine Kinase	Chain A, domain 1	CATH (4.3.0)
G	3.30.590.10	Alpha Beta	2-Layer Sandwich	Creatine Kinase	Chain A, domain 2	CATH (4.3.0)
H	1.10.135.10	Mainly Alpha	Orthogonal Bundle	Transferase Creatine Kinase	Chain A, domain 1	CATH (4.3.0)
H	3.30.590.10	Alpha Beta	2-Layer Sandwich	Creatine Kinase	Chain A, domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF00217	ATP:guanido phosphotransferase, C-terminal catalytic domain (ATP-gua_Ptrans)	ATP:guanido phosphotransferase, C-terminal catalytic domain	The substrate binding site is located in the cleft between N and C-terminal domains, but most of the catalytic residues are found in the larger C-terminal domain.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	PF02807	ATP:guanido phosphotransferase, N-terminal domain (ATP-gua_PtransN)	ATP:guanido phosphotransferase, N-terminal domain	The N-terminal domain has an all-alpha fold.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Creatine kinase S-type, mitochondrial	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding creatine kinase activity kinase activity transferase activity catalytic activity phosphotransferase activity, nitrogenous group as acceptor transferase activity, transferring phosphorus-containing groups	multicellular organismal process system process muscle contraction muscle system process phosphocreatine metabolic process phosphocreatine biosynthetic process modified amino acid biosynthetic process modified amino acid metabolic process phosphagen biosynthetic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process multicellular organismal process system process muscle contraction muscle system process phosphocreatine metabolic process phosphocreatine biosynthetic process modified amino acid biosynthetic process modified amino acid metabolic process phosphagen biosynthetic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process cellular process phosphorus metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR022415	ATP:guanido phosphotransferase active site	Active Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR022413	ATP:guanido phosphotransferase, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR022414	ATP:guanido phosphotransferase, catalytic domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036802	ATP:guanido phosphotransferase, N-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR014746	Glutamine synthetase/guanido kinase, catalytic domain	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR000749	ATP:guanido phosphotransferase	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H	Pharos: P17540	astrocytic tumor invasive ductal breast carcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia ductal breast carcinoma in situ malignant ependymoma psoriasis gastric carcinoma oligodendroglioma subependymal giant cell astrocytoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.