Structure of the human APC-Cdh1-Hsl1-UbcH10 complex.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| I | SCOP2B Superfamily | WD40 repeat-like | 8106386 | 3001694 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | WD40 repeat-like | 8106386 | 3001694 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | CDC26-like | 8053843 | 3002235 | SCOP2B (2022-06-29) |
| V [auth W] | SCOP2B Superfamily | CDC26-like | 8053843 | 3002235 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Anaphase-promoting complex subunit 16-like | 8053719 | 3002218 | SCOP2B (2022-06-29) |
| P | SCOP2B Superfamily | TPR-like | 8057064 | 3001345 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | TPR-like | 8057064 | 3001345 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | RING/U-box like | 8082719 | 3000160 | SCOP2B (2022-06-29) |
| R | SCOP2B Superfamily | WD40 repeat-like | 8106391 | 3001694 | SCOP2B (2022-06-29) |
| Q | SCOP2B Superfamily | UBC-like | 8033738 | 3000570 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | Winged helix DNA-binding domain | 8084656 | 3000034 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | Anaphase-promoting complex subunit 13 | 8093172 | 3002688 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | galactose-binding domain-like | 8037020 | 3000087 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| J | e5a31J1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleic acid-binding protein | T: TPR_8, TPR_19 | F: | ECOD (20:10:01) | |
| I | e5a31I1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleic acid-binding protein | T: TPR_8, TPR_19 | F: | ECOD (20:10:01) | |
| F | e5a31F1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleic acid-binding protein | T: TPR_8, TPR_19 | F: | ECOD (20:10:01) | |
| H | e5a31H1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleic acid-binding protein | T: TPR_8, TPR_19 | F: | ECOD (20:10:01) | |
| P | e5a31P1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleic acid-binding protein | T: TPR_8, TPR_19 | F: | ECOD (20:10:01) | |
| C | e5a31C1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleic acid-binding protein | T: TPR_8, TPR_19 | F: | ECOD (20:10:01) | |
| X [auth Y] | e5a31Y1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleic acid-binding protein | T: AAA_5 | F: | ECOD (20:10:01) | |
| W [auth X] | e5a31X1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleic acid-binding protein | T: TPR_8, TPR_19 | F: | ECOD (20:10:01) | |
| B | e5a31B1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleic acid-binding protein | T: TPR_8, TPR_19 | F: | ECOD (20:10:01) | |
| R | e5a31R1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleic acid-binding protein | T: TPR_8, TPR_19 | F: | ECOD (20:10:01) | |
| Q | e5a31Q1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleic acid-binding protein | T: TPR_8, TPR_19 | F: | ECOD (20:10:01) | |
| O | e5a31O1 | A: CBS-domain | X: Porins | H: Invertebrate chitin-binding proteins | T: CBM_14 | F: | ECOD (20:10:01) | |
| N | e5a31N1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleic acid-binding protein | T: TPR_8, TPR_19 | F: | ECOD (20:10:01) | |
| L | e5a31L1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleic acid-binding protein | T: TPR_8, TPR_19 | F: | ECOD (20:10:01) | |
| K | e5a31K1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleic acid-binding protein | T: TPR_8, TPR_19 | F: | ECOD (20:10:01) | |
| A | e5a31A1 | A: Lipocalins/Streptavidin | X: Enterocin 7A and 7B | H: Enterocin 7A and 7B | T: AAA_5 | F: | ECOD (20:10:01) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF12895 | Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) | Anaphase-promoting complex, cyclosome, subunit 3 | - | Repeat | |
| PF13424 | Tetratricopeptide repeat (TPR_12) | Tetratricopeptide repeat | - | Repeat | |
| PF12896 | Anaphase-promoting complex, cyclosome, subunit 4 (ANAPC4) | Anaphase-promoting complex, cyclosome, subunit 4 | Apc4 is one of the larger of the subunits of the anaphase-promoting complex or cyclosome. This family represents the long domain downstream of the WD40 repeat/s that are present on the Apc4 subunits. The anaphase-promoting complex is a multiprotein s ... | Domain | |
| PF12894 | Anaphase-promoting complex subunit 4 WD40 domain (ANAPC4_WD40) | Anaphase-promoting complex subunit 4 WD40 domain | - | Repeat | |
| PF23405 | APC4, WD40 domain C-terminal half (WD40_APC4_C-half) | APC4, WD40 domain C-terminal half | - | Repeat | |
| G, V [auth W] | PF10471 | Anaphase-promoting complex APC subunit CDC26 (ANAPC_CDC26) | Anaphase-promoting complex APC subunit CDC26 | - | Family |
| PF12895 | Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) | Anaphase-promoting complex, cyclosome, subunit 3 | - | Repeat | |
| PF00515 | Tetratricopeptide repeat (TPR_1) | Tetratricopeptide repeat | - | Repeat | |
| PF15243 | Anaphase-promoting complex subunit 15 (ANAPC15) | Anaphase-promoting complex subunit 15 | - | Family | |
| PF04049 | Anaphase promoting complex subunit 8 / Cdc23 (ANAPC8) | Anaphase promoting complex subunit 8 / Cdc23 | - | Repeat | |
| W [auth X], X [auth Y] | PF13181 | Tetratricopeptide repeat (TPR_8) | Tetratricopeptide repeat | - | Repeat |
| W [auth X], X [auth Y] | PF13432 | Tetratricopeptide repeat (TPR_16) | Tetratricopeptide repeat | - | Repeat |
| PF12861 | Anaphase-promoting complex subunit 11 RING-H2 finger (zf-ANAPC11) | Anaphase-promoting complex subunit 11 RING-H2 finger | Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome [1]. The APC subunits are cullin family proteins with ubiquitin ligase activity [2]. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried ou ... | Domain | |
| PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |
| PF00179 | Ubiquitin-conjugating enzyme (UQ_con) | Ubiquitin-conjugating enzyme | Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ... | Domain | |
| PF12862 | Anaphase-promoting complex subunit 5 (ANAPC5) | Anaphase-promoting complex subunit 5 | - | Repeat | |
| PF21371 | Anaphase-promoting complex subunit 5, N-terminal domain (Apc5_N) | Anaphase-promoting complex subunit 5, N-terminal domain | This domain is found at the N-terminal end of Anaphase-promoting complex subunit 5 from humans (Apc5), a component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitos ... | Domain | |
| PF26557 | Cullin alpha+beta domain (Cullin_AB) | Cullin alpha+beta domain | This entry represents the alpha+beta domain found just before the C-terminal domain of Cullin proteins. | Domain | |
| PF25773 | ANAPC2-like, TPR repeats (TPR_ANAPC2) | ANAPC2-like, TPR repeats | - | Repeat | |
| PF08672 | Anaphase promoting complex (APC) subunit 2 (ANAPC2) | Anaphase promoting complex (APC) subunit 2 | The anaphase promoting complex or cyclosome (APC2) is an E3 ubiquitin ligase which is part of the SCF family of ubiquitin ligases. Ubiquitin ligases catalyse the transfer of ubiquitin from the ubiquitin conjugating enzyme (E2), to the substrate prot ... | Domain | |
| PF05839 | Apc13p protein (Apc13p) | Apc13p protein | - | Family | |
| PF03256 | Anaphase-promoting complex, subunit 10 (APC10) (ANAPC10) | Anaphase-promoting complex, subunit 10 (APC10) | - | Family | |
| PF12895 | Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) | Anaphase-promoting complex, cyclosome, subunit 3 | - | Repeat | |
| PF13424 | Tetratricopeptide repeat (TPR_12) | Tetratricopeptide repeat | - | Repeat | |
| PF20518 | Anaphase-promoting complex subunit 1 middle domain (Apc1_MidN) | Anaphase-promoting complex subunit 1 middle domain | - | Repeat | |
| PF18122 | Anaphase-promoting complex sub unit 1 C-terminal domain (APC1_C) | Anaphase-promoting complex sub unit 1 C-terminal domain | This is the C-terminal domain of chain A, also known as sub-unit 1, found in anaphase-promoting complex (APC/C) present in Homo sapiens. APC/C is an ubiquitin ligase that controls chromosome segregation and mitotic exit [1]. | Domain | |
| PF12859 | Anaphase-promoting complex subunit 1 WD40 beta-propeller domain (ANAPC1) | Anaphase-promoting complex subunit 1 WD40 beta-propeller domain | - | Repeat | |
| PF21282 | APC1 beta sandwich domain (APC1_3rd) | APC1 beta sandwich domain | This domain is found close to the C-terminus of the APC1 protein which is a component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the ce ... | Domain |














