5A61

Crystal structure of full-length E. coli ygiF in complex with tripolyphosphate and two manganese ions.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	CYTH-like phosphatases	8105514	3001426	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	CHAD domain-like	8105512	3002841	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PPPi_1st	e5a61A1	A: alpha bundles	X: Four-helical up-and-down bundle	H: CHAD domain (From Topology)	T: CHAD domain	F: PPPi_1st	ECOD (1.6)
A	PPPi_2nd	e5a61A3	A: alpha bundles	X: Four-helical up-and-down bundle	H: CHAD domain (From Topology)	T: CHAD domain	F: PPPi_2nd	ECOD (1.6)
A	CYTH	e5a61A2	A: a+b complex topology	X: mRNA triphosphatase CET1-related (From Topology)	H: mRNA triphosphatase CET1-related (From Topology)	T: mRNA triphosphatase CET1-related	F: CYTH	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01928	CYTH domain (CYTH)	CYTH domain	These sequences are functionally identified as members of the adenylate cyclase family, which catalyses the conversion of ATP to 3',5'-cyclic AMP and pyrophosphate. Six distinct non-homologous classes of AC have been identified. The structure of th ...	These sequences are functionally identified as members of the adenylate cyclase family, which catalyses the conversion of ATP to 3',5'-cyclic AMP and pyrophosphate. Six distinct non-homologous classes of AC have been identified. The structure of three classes of adenylyl cyclases have been solved [3].	Domain
A	PF05235	CHAD domain (CHAD)	CHAD domain	The CHAD domain is an alpha-helical domain functionally associated with the Pfam:PF01928 domains. It has conserved histidines that may chelate metals [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	INORGANIC TRIPHOSPHATASE	pyrophosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity inorganic triphosphate phosphatase activity cation binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR007899	CHAD domain	Domain
A	IPR023577	CYTH domain	Domain
A	IPR039013	Inorganic triphosphatase YgiF	Family
A	IPR033469	CYTH-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.