5C9F | pdb_00005c9f

Crystal structure of a retropepsin-like aspartic protease from Rickettsia conorii

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Dimeric aspartyl proteases	8049469	4004443	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Acid proteases	8090352	3001059	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Acid proteases	8090352	3001059	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Acid proteases	8090352	3001059	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Acid proteases	8090352	3001059	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	P53_tetramer	e5c9fA1	A: alpha bundles	X: beta-clip	H: p53 tetramerization domain	T: p53 tetramerization domain	F: P53_tetramer	ECOD (develop294)
B	P53_tetramer	e5c9fB1	A: alpha bundles	X: beta-clip	H: p53 tetramerization domain	T: p53 tetramerization domain	F: P53_tetramer	ECOD (develop294)
C	P53_tetramer	e5c9fC1	A: alpha bundles	X: beta-clip	H: p53 tetramerization domain	T: p53 tetramerization domain	F: P53_tetramer	ECOD (develop294)
D	TM_ErbB1	e5c9fD1	A: alpha bundles	X: C-terminal additional helical subdomain in reovirus polymerase lambda3	H: C-terminal additional helical subdomain in reovirus polymerase lambda3	T: C-terminal additional helical subdomain in reovirus polymerase lambda3	F: TM_ErbB1	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.70.10	Mainly Beta	Beta Barrel	Cathepsin D, subunit A	domain 1	CATH (4.3.0)
B	2.40.70.10	Mainly Beta	Beta Barrel	Cathepsin D, subunit A	domain 1	CATH (4.3.0)
C	2.40.70.10	Mainly Beta	Beta Barrel	Cathepsin D, subunit A	domain 1	CATH (4.3.0)
D	2.40.70.10	Mainly Beta	Beta Barrel	Cathepsin D, subunit A	domain 1	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	ApRick protease	aspartic-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity aspartic-type endopeptidase activity catalytic activity endopeptidase activity acyltransferase activity transferase activity	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR011969	Clan AA aspartic peptidase, C-terminal	Domain
A, B, C, D	IPR034122	Retropepsin-like domain, bacterial	Domain
A, B, C, D	IPR021109	Aspartic peptidase domain superfamily	Homologous Superfamily
A, B, C, D	IPR001969	Aspartic peptidase, active site	Active Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.