5D9V | pdb_00005d9v

Crystal structure of oxidized dehydroascorbate reductase (OsDHAR) from Oryza sativa L. japonica

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5d9va2	All alpha proteins	GST C-terminal domain-like	GST C-terminal domain-like	automated matches	automated matches	Rice (Oryza sativa Japonica Group ) [TaxId: 39947 ],	SCOPe (2.08)
A	d5d9va1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	Rice (Oryza sativa Japonica Group ) [TaxId: 39947 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	IBR_2	e5d9vA1	A: alpha bundles	X: HhH/H2TH	H: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	T: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein	F: IBR_2	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
A	1.20.1050.10	Mainly Alpha	Up-down Bundle	Glutathione S-transferase Yfyf (Class Pi)	Chain A, domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF13417	Glutathione S-transferase, N-terminal domain (GST_N_3)	Glutathione S-transferase, N-terminal domain		Domain
A	PF13410	Glutathione S-transferase, C-terminal domain (GST_C_2)	Glutathione S-transferase, C-terminal domain	This domain is closely related to Pfam:PF00043.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Dehydroascorbate reductase	glutathione transferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity oxidoreductase activity, acting on a sulfur group of donors disulfide oxidoreductase activity oxidoreductase activity antioxidant activity glutathione disulfide oxidoreductase activity glutathione dehydrogenase (ascorbate) activity oxidoreductase activity, acting on a sulfur group of donors, quinone or similar compound as acceptor	cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction positive regulation of salicylic acid mediated signaling pathway response to salicylic acid cell communication positive regulation of response to stimulus signal transduction salicylic acid mediated signaling pathway cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction positive regulation of salicylic acid mediated signaling pathway response to salicylic acid cell communication positive regulation of response to stimulus signal transduction salicylic acid mediated signaling pathway positive regulation of cellular process cellular response to salicylic acid stimulus regulation of biological process regulation of signaling regulation of salicylic acid mediated signaling pathway biological regulation response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to chemical stimulus regulation of response to stimulus response to chemical regulation of cell communication cellular process positive regulation of signaling monosaccharide metabolic process glutathione metabolic process carbohydrate metabolic process catabolic process oxoacid metabolic process hydrogen peroxide metabolic process reactive oxygen species metabolic process modified amino acid metabolic process carboxylic acid metabolic process primary metabolic process organic acid metabolic process L-ascorbic acid metabolic process ascorbate glutathione cycle lactone metabolic process sulfur compound metabolic process metabolic process small molecule metabolic process hydrogen peroxide catabolic process cellular detoxification detoxification cellular oxidant detoxification cellular response to toxic substance response to toxic substance	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR044627	Dehydroascorbate reductases DHAR1/2/3/4	Family
A	IPR010987	Glutathione S-transferase, C-terminal-like	Domain
A	IPR036282	Glutathione S-transferase, C-terminal domain superfamily	Homologous Superfamily
A	IPR004045	Glutathione S-transferase, N-terminal	Domain
A	IPR036249	Thioredoxin-like superfamily	Homologous Superfamily
A	IPR040079	Glutathione transferase family	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A	OCS	Parent Component: CYS RESID: AA0556 PSI-MOD : L-cysteic acid (L-cysteine sulfonic acid) MOD:00460

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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