ROK repressor Lmo0178 from Listeria monocytogenes bound to operator
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| F [auth L] | Plug | e5f7qL1 | A: alpha bundles | X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | F: Plug | ECOD (develop294) |
| D [auth J] | Plug | e5f7qJ1 | A: alpha bundles | X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | F: Plug | ECOD (develop294) |
| B [auth E] | DUF305 | e5f7qE1 | A: alpha bundles | X: beta-propeller-like | H: beta-propeller | T: 6-bladed | F: DUF305 | ECOD (develop294) |
| A [auth C] | Plug | e5f7qC1 | A: alpha bundles | X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 | F: Plug | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| F [auth L] | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (utative) |
| F [auth L] | 3.30.420.40 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (utative) |
| D [auth J] | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (utative) |
| D [auth J] | 3.30.420.40 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (utative) |
| A [auth C] | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (utative) |
| A [auth C] | 3.30.420.40 | Alpha Beta | 2-Layer Sandwich | Nucleotidyltransferase | domain 5 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| A [auth C], B [auth E], D [auth J], F [auth L] | PF00480 | ROK family (ROK) | ROK family | - | Family |
| A [auth C], B [auth E], D [auth J], F [auth L] | PF13412 | Winged helix-turn-helix DNA-binding (HTH_24) | Winged helix-turn-helix DNA-binding | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| E [auth K] | Operator | - | - | - |
| C [auth F] | Operator | - | - | - |
| A [auth C], B [auth E], D [auth J], F [auth L] | Lmo0178 protein | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| A [auth C], B [auth E], D [auth J], F [auth L] | IPR043129 | ATPase, nucleotide binding domain | Homologous Superfamily |
| A [auth C], B [auth E], D [auth J], F [auth L] | IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily |
| A [auth C], B [auth E], D [auth J], F [auth L] | IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily |
| A [auth C], B [auth E], D [auth J], F [auth L] | IPR000600 | ROK family | Family |














