5G2Q | pdb_00005g2q

The crystal structure of a S-selective transaminase from Arthrobacter sp. with alanine bound

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd5g2qb_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases automated matches automated matches (Arthrobacter sp. ) [TaxId: 1667 ], SCOPe (2.08)
Cd5g2qc_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases automated matches automated matches (Arthrobacter sp. ) [TaxId: 1667 ], SCOPe (2.08)
Dd5g2qd_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases automated matches automated matches (Arthrobacter sp. ) [TaxId: 1667 ], SCOPe (2.08)
Fd5g2qf_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases automated matches automated matches (Arthrobacter sp. ) [TaxId: 1667 ], SCOPe (2.08)
Gd5g2qg_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases automated matches automated matches (Arthrobacter sp. ) [TaxId: 1667 ], SCOPe (2.08)
Id5g2qi_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases automated matches automated matches (Arthrobacter sp. ) [TaxId: 1667 ], SCOPe (2.08)
Jd5g2qj_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases automated matches automated matches (Arthrobacter sp. ) [TaxId: 1667 ], SCOPe (2.08)
Ld5g2ql_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases automated matches automated matches (Arthrobacter sp. ) [TaxId: 1667 ], SCOPe (2.08)
Kd5g2qk_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases automated matches automated matches (Arthrobacter sp. ) [TaxId: 1667 ], SCOPe (2.08)
Hd5g2qh_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases automated matches automated matches (Arthrobacter sp. ) [TaxId: 1667 ], SCOPe (2.08)
Ed5g2qe_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases automated matches automated matches (Arthrobacter sp. ) [TaxId: 1667 ], SCOPe (2.08)
Ad5g2qa_ Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases automated matches automated matches (Arthrobacter sp. ) [TaxId: 1667 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyPLP-dependent transferases 8093796 3000954 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPLP-dependent transferases 8093796 3000954 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyPLP-dependent transferases 8093796 3000954 SCOP2B (2022-06-29)
FSCOP2 FamilyGABA-aminotransferase-like 8093795 4000675 SCOP2 (2022-06-29)
FSCOP2 SuperfamilyPLP-dependent transferases 8093796 3000954 SCOP2 (2022-06-29)
GSCOP2B SuperfamilyPLP-dependent transferases 8093796 3000954 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyPLP-dependent transferases 8093796 3000954 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyPLP-dependent transferases 8093796 3000954 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyPLP-dependent transferases 8093796 3000954 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyPLP-dependent transferases 8093796 3000954 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyPLP-dependent transferases 8093796 3000954 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyPLP-dependent transferases 8093796 3000954 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPLP-dependent transferases 8093796 3000954 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Be5g2qB1 A: cradle loop barrelX: RIFT-relatedH: acid proteaseT: DUF5110F:ECOD (20:10:01)
Ce5g2qC1 A: cradle loop barrelX: RIFT-relatedH: acid proteaseT: DUF5110F:ECOD (20:10:01)
De5g2qD1 A: cradle loop barrelX: RIFT-relatedH: acid proteaseT: DUF5110F:ECOD (20:10:01)
Fe5g2qF1 A: cradle loop barrelX: RIFT-relatedH: acid proteaseT: DUF5110F:ECOD (20:10:01)
Ge5g2qG1 A: cradle loop barrelX: RIFT-relatedH: acid proteaseT: DUF5110F:ECOD (20:10:01)
Ie5g2qI1 A: cradle loop barrelX: RIFT-relatedH: acid proteaseT: DUF5110F:ECOD (20:10:01)
Je5g2qJ1 A: cradle loop barrelX: RIFT-relatedH: acid proteaseT: DUF5110F:ECOD (20:10:01)
Le5g2qL1 A: cradle loop barrelX: RIFT-relatedH: acid proteaseT: DUF5110F:ECOD (20:10:01)
Ke5g2qK1 A: cradle loop barrelX: RIFT-relatedH: acid proteaseT: DUF5110F:ECOD (20:10:01)
He5g2qH1 A: cradle loop barrelX: RIFT-relatedH: acid proteaseT: DUF5110F:ECOD (20:10:01)
Ee5g2qE1 A: cradle loop barrelX: RIFT-relatedH: acid proteaseT: DUF5110F:ECOD (20:10:01)
Ae5g2qA1 A: cradle loop barrelX: RIFT-relatedH: acid proteaseT: DUF5110F:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
B3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
C3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
C3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
D3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
D3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
F3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
F3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
G3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
G3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
I3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
I3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
J3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
J3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
L3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
L3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
K3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
K3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
H3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
H3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
E3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
E3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
A3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
A3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
TRANSAMINASE -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR049704Aminotransferases class-III pyridoxal-phosphate attachment siteConserved Site
A, B, C, D, E
IPR015424Pyridoxal phosphate-dependent transferaseHomologous Superfamily
A, B, C, D, E
IPR005814Aminotransferase class-IIIFamily
A, B, C, D, E
IPR015421Pyridoxal phosphate-dependent transferase, major domainHomologous Superfamily
A, B, C, D, E
IPR015422Pyridoxal phosphate-dependent transferase, small domainHomologous Superfamily