5GAK

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth b]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053046 3000334 SCOP2B (2022-06-29)
L [auth c]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8077127 3001045 SCOP2B (2022-06-29)
M [auth D]SCOP2B SuperfamilyZn-binding ribosomal proteins 8103126 3001320 SCOP2B (2022-06-29)
N [auth d]SCOP2B SuperfamilyRibosomal protein L29e 8053045 3002157 SCOP2B (2022-06-29)
P [auth e]SCOP2B SuperfamilyL30e-like 8039862 3001739 SCOP2B (2022-06-29)
Q [auth F]SCOP2B SuperfamilyTranslational proteins 8078363 3000811 SCOP2B (2022-06-29)
S [auth G]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like 8052815 3002143 SCOP2B (2022-06-29)
S [auth G]SCOP2B SuperfamilyRibosomal protein L4 8052816 3001146 SCOP2B (2022-06-29)
B [auth X]SCOP2B Superfamily50S Ribosomal protein L14-like 8103364 3000433 SCOP2B (2022-06-29)
U [auth H]SCOP2B SuperfamilyTranslational machinery components 8052875 3000571 SCOP2B (2022-06-29)
V [auth h]SCOP2B SuperfamilyTranslational proteins 8087451 3000811 SCOP2B (2022-06-29)
W [auth I]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053109 3000334 SCOP2B (2022-06-29)
X [auth i]SCOP2B SuperfamilyRibosomal protein L34e-like 8053547 3002203 SCOP2B (2022-06-29)
Y [auth J]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8052917 3001378 SCOP2B (2022-06-29)
Y [auth J]SCOP2B SuperfamilyRibosomal L30p/L7e protein, N-terminal domain-lke 8052916 3002152 SCOP2B (2022-06-29)
AA [auth K]SCOP2B SuperfamilyL30e-like 8063962 3001739 SCOP2B (2022-06-29)
BA [auth k]SCOP2B SuperfamilyRibosomal protein L36e 8053115 3002161 SCOP2B (2022-06-29)
DA [auth l]SCOP2B SuperfamilyZn-binding ribosomal proteins 8080044 3001320 SCOP2B (2022-06-29)
EA [auth M]SCOP2B SuperfamilyRL5-like 8073884 3001709 SCOP2B (2022-06-29)
FA [auth m]SCOP2B SuperfamilyRibosomal L38e protein-like 8053562 3002206 SCOP2B (2022-06-29)
GA [auth N]SCOP2B SuperfamilyRibosomal protein L13e-like 8053159 3002162 SCOP2B (2022-06-29)
HA [auth n]SCOP2B SuperfamilyRibosomal protein L39e 8078549 3001756 SCOP2B (2022-06-29)
KA [auth P]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8082481 3000210 SCOP2B (2022-06-29)
MA [auth Q]SCOP2B SuperfamilyRibosomal protein L13 8066053 3001134 SCOP2B (2022-06-29)
OA [auth R]SCOP2B SuperfamilyRibosomal protein L22 8076708 3001078 SCOP2B (2022-06-29)
QA [auth S]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8095970 3001045 SCOP2B (2022-06-29)
RA [auth s]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8079407 3000884 SCOP2B (2022-06-29)
SA [auth T]SCOP2B SuperfamilyRibosomal protein L19 (L19e) 8077485 3000890 SCOP2B (2022-06-29)
VA [auth W]SCOP2B Superfamily60S Ribosomal protein L22e 8053058 3002158 SCOP2B (2022-06-29)
F [auth Z]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8095962 3000210 SCOP2B (2022-06-29)
H [auth a]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8076760 3000334 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth b]Ribosomal_L27ee5gakb1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L27eECOD (1.6)
K [auth C]Ribosomal_L44e5gakC1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L44ECOD (1.6)
L [auth c]Ribosomal_L18e5gakc1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
M [auth D]Ribosomal_L37aee5gakD1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37aeECOD (1.6)
N [auth d]Ribosomal_L29ee5gakd1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: Ribosomal_L29eECOD (1.6)
O [auth E]Ribosomal_L2_1e5gakE1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
O [auth E]Ribosomal_L2_C_2e5gakE2 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_C_2ECOD (1.6)
P [auth e]Ribosomal_L7Aee5gake1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
Q [auth F]Ribosomal_L3e5gakF1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
R [auth f]Ribosomal_L31ee5gakf1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: Ribosomal_L31eECOD (1.6)
S [auth G]Ribosomal_L4e5gakG2 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
S [auth G]Ribos_L4_asso_Ce5gakG3 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: Ribos_L4_asso_CECOD (1.6)
B [auth X]Ribosomal_L14e5gakX1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
T [auth g]Ribosomal_L32ee5gakg1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: Ribosomal_L32eECOD (1.6)
U [auth H]Ribosomal_L5ee5gakH1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L5eECOD (1.6)
V [auth h]Ribosomal_L35Aee5gakh1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L35AeECOD (1.6)
W [auth I]Ribosomal_L6ee5gakI1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L6eECOD (1.6)
X [auth i]Ribosomal_L34ee5gaki1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: Ribosomal_L34eECOD (1.6)
Y [auth J]Ribosomal_L30_1e5gakJ1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30_1ECOD (1.6)
Z [auth j]Ribosomal_L29_2e5gakj1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29_2ECOD (1.6)
AA [auth K]Ribosomal_L7Ae_1e5gakK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
BA [auth k]Ribosomal_L36ee5gakk1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: Ribosomal_L36eECOD (1.6)
CA [auth L]Ribosomal_L6_2e5gakL1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_2ECOD (1.6)
CA [auth L]Ribosomal_L6e5gakL2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
DA [auth l]Ribosomal_L37ee5gakl1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37eECOD (1.6)
EA [auth M]Ribosomal_L5_Ce5gakM1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
FA [auth m]Ribosomal_L38ee5gakm1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: Ribosomal_L38eECOD (1.6)
GA [auth N]Ribosomal_L13ee5gakN1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: Ribosomal_L13eECOD (1.6)
HA [auth n]Ribosomal_L39e5gakn1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: Ribosomal_L39ECOD (1.6)
IA [auth O]Ribosomal_L14ee5gakO1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L14eECOD (1.6)
JA [auth o]Ribosomal_L40ee5gako1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L40eECOD (1.6)
KA [auth P]Ribosomal_L15ee5gakP1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L15eECOD (1.6)
LA [auth p]Ribosomal_L41e5gakp1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: Ribosomal_L41ECOD (1.6)
MA [auth Q]Ribosomal_L13e5gakQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
D [auth Y]Ribosomal_L24ee5gakY1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_L24eECOD (1.6)
NA [auth q]eIF-5ae5gakq1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: eIF-5aECOD (1.6)
NA [auth q]EFP_N_1e5gakq2 A: beta barrelsX: SH3H: SH3T: SH3F: EFP_N_1ECOD (1.6)
OA [auth R]Ribosomal_L22e5gakR1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
QA [auth S]Ribosomal_L18e5gakS1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
RA [auth s]Ribosomal_L16e5gaks1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
SA [auth T]Ribosomal_L19e_Ne5gakT2 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: Ribosomal_L19e_NECOD (1.6)
SA [auth T]Ribosomal_L19e_Ce5gakT1 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: Ribosomal_L19e_CECOD (1.6)
TA [auth U]Ribosomal_L18Ae5gakU1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: Ribosomal_L18AECOD (1.6)
UA [auth V]Ribosomal_L21ee5gakV1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L21eECOD (1.6)
VA [auth W]Ribosomal_L22ee5gakW1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: Ribosomal_L22eECOD (1.6)
F [auth Z]Ribosomal_L23_3e5gakZ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_3ECOD (1.6)
H [auth a]Ribosomal_L26e5gaka1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L26ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
K [auth C]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
K [auth C]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
M [auth D]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
M [auth D]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
O [auth E]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
O [auth E]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domainDomain
Q [auth F]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
S [auth G]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins. Domain
S [auth G]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
S [auth G]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
B [auth X]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
U [auth H]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
U [auth H]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins. Domain
U [auth H]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35AeDomain
W [auth I]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
Y [auth J]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
Y [auth J]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
AA [auth K]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
AA [auth K]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...Domain
CA [auth L]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
CA [auth L]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
EA [auth M]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
EA [auth M]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
EA [auth M]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
GA [auth N]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
GA [auth N]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
IA [auth O]PF01020Ribosomal L40e family (Ribosomal_L40e)Ribosomal L40e family- Family
IA [auth O]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
IA [auth O]PF00467KOW motif (KOW)KOW motif- Family
KA [auth P]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
KA [auth P]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
MA [auth Q]PF21485Translation initiation factor 5A-like, N-terminal (IF5A-like_N)Translation initiation factor 5A-like, N-terminalThis is the N-terminal domain of Translation initiation factor 5A from eukaryotes and archaea, which has a SH2-like fold. These proteins are involved in translation elongation and eIF5A is specifically required to promote peptide-bond formation betwe ...Domain
MA [auth Q]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
MA [auth Q]PF01287Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold (eIF-5a)Eukaryotic elongation factor 5A hypusine, DNA-binding OB foldeIF5A, previously thought to be an initiation factor, has been shown to be required for peptide chain elongation in yeast [1]. Domain
D [auth Y]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24eDomain
OA [auth R]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
QA [auth S]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
QA [auth S]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
SA [auth T]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
TA [auth U]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain
VA [auth W]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
F [auth Z]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
G [auth A]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
G [auth A]PF00467KOW motif (KOW)KOW motif- Family
I [auth B]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]25S rRNA---
J [auth b]60S ribosomal protein L27-A
K [auth C]60S ribosomal protein L42-A
L [auth c]60S ribosomal protein L28
M [auth D]60S ribosomal protein L43-A
N [auth d]60S ribosomal protein L29
O [auth E]60S ribosomal protein L2-A
P [auth e]60S ribosomal protein L30
Q [auth F]60S ribosomal protein L3
R [auth f]60S ribosomal protein L31-A
S [auth G]60S ribosomal protein L4-A
B [auth X]60S ribosomal protein L23-A
T [auth g]60S ribosomal protein L32
U [auth H]60S ribosomal protein L5
V [auth h]60S ribosomal protein L33-A
W [auth I]60S ribosomal protein L6-A
X [auth i]60S ribosomal protein L34-A
Y [auth J]60S ribosomal protein L7-A
Z [auth j]60S ribosomal protein L35-A
AA [auth K]60S ribosomal protein L8-A
BA [auth k]60S ribosomal protein L36-A
CA [auth L]60S ribosomal protein L9-A
C [auth 3]5S rRNA---
DA [auth l]60S ribosomal protein L37-A
EA [auth M]60S ribosomal protein L11-A
FA [auth m]60S ribosomal protein L38
GA [auth N]60S ribosomal protein L13-A
HA [auth n]60S ribosomal protein L39
IA [auth O]60S ribosomal protein L14-B
JA [auth o]Ubiquitin-60S ribosomal protein L40
KA [auth P]60S ribosomal protein L15-A
LA [auth p]60S ribosomal protein L41-A
MA [auth Q]60S ribosomal protein L16-A
D [auth Y]60S ribosomal protein L24-A
NA [auth q]Eukaryotic translation initiation factor 5A-1
OA [auth R]60S ribosomal protein L17-A
PA [auth r]ribosomal protein RPL1---
QA [auth S]60S ribosomal protein L18-A
RA [auth s]60S ribosomal protein L10
SA [auth T]60S ribosomal protein L19-A
TA [auth U]60S ribosomal protein L20-A
UA [auth V]60S ribosomal protein L21-A
VA [auth W]60S ribosomal protein L22-A
WA [auth z]nascent polypeptide chain---
E [auth 4]5.8S rRNA---
F [auth Z]60S ribosomal protein L25
G [auth A]The A-site tRNA was modeled based on an E. coli tRNA-Lys---
H [auth a]60S ribosomal protein L26-A
I [auth B]P-site tRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth b]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
J [auth b]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
J [auth b]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
J [auth b]IPR001141Large ribosomal subunit protein eL27Family
J [auth b]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
K [auth C]IPR053708Eukaryotic Ribosomal Large Subunit eL42Homologous Superfamily
K [auth C]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
K [auth C]IPR000552Large ribosomal subunit protein eL42Family
L [auth c]IPR021131Large ribosomal subunit protein uL15/eL18Domain
L [auth c]IPR030878Large ribosomal subunit protein uL15Family
L [auth c]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
L [auth c]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
M [auth D]IPR002674Large ribosomal subunit protein eL43Family
M [auth D]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
M [auth D]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
M [auth D]IPR050522Eukaryotic ribosomal protein eL43Family
N [auth d]IPR002673Large ribosomal subunit protein eL29Family
O [auth E]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
O [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
O [auth E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
O [auth E]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
O [auth E]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
O [auth E]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
O [auth E]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
O [auth E]IPR002171Large ribosomal subunit protein uL2Family
P [auth e]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
P [auth e]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
P [auth e]IPR039109Large ribosomal subunit protein eL30-likeFamily
P [auth e]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
Q [auth F]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
Q [auth F]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
Q [auth F]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
Q [auth F]IPR000597Large ribosomal subunit protein uL3Family
Q [auth F]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
R [auth f]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
R [auth f]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
R [auth f]IPR000054Large ribosomal subunit protein eL31Family
S [auth G]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
S [auth G]IPR002136Large ribosomal subunit protein uL4Family
S [auth G]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
S [auth G]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
S [auth G]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
B [auth X]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
B [auth X]IPR000218Large ribosomal subunit protein uL14Family
B [auth X]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
T [auth g]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
T [auth g]IPR001515Large ribosomal subunit protein eL32Family
T [auth g]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
U [auth H]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
U [auth H]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
V [auth h]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
V [auth h]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
V [auth h]IPR001780Large ribosomal subunit protein eL33Family
V [auth h]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
W [auth I]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
W [auth I]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
W [auth I]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
W [auth I]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
W [auth I]IPR000915Large ribosomal subunit protein eL6Family
X [auth i]IPR008195Large ribosomal subunit protein eL34Family
X [auth i]IPR038562Large ribosomal subunit protein eL34, C-terminal domain superfamilyHomologous Superfamily
X [auth i]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
Y [auth J]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
Y [auth J]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
Y [auth J]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
Y [auth J]IPR039699Large ribosomal subunit protein uL30Family
Y [auth J]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
Y [auth J]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
Y [auth J]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
Z [auth j]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
Z [auth j]IPR001854Large ribosomal subunit protein uL29Family
Z [auth j]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
Z [auth j]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
AA [auth K]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
AA [auth K]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
AA [auth K]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
AA [auth K]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
AA [auth K]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
AA [auth K]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
BA [auth k]IPR000509Large ribosomal subunit protein eL36Family
BA [auth k]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
CA [auth L]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
CA [auth L]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
CA [auth L]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
CA [auth L]IPR000702Large ribosomal subunit protein uL6-likeFamily
DA [auth l]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
DA [auth l]IPR001569Large ribosomal subunit protein eL37Family
DA [auth l]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
DA [auth l]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
EA [auth M]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
EA [auth M]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
EA [auth M]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
EA [auth M]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
EA [auth M]IPR002132Large ribosomal subunit protein uL5Family
FA [auth m]IPR002675Large ribosomal subunit protein eL38Family
FA [auth m]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
GA [auth N]IPR001380Large ribosomal subunit protein eL13Family
GA [auth N]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
HA [auth n]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
HA [auth n]IPR000077Large ribosomal subunit protein eL39Family
HA [auth n]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
IA [auth O]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IA [auth O]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IA [auth O]IPR039660Large ribosomal subunit protein eL14Family
IA [auth O]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
IA [auth O]IPR002784Large ribosomal subunit protein eL14 domainDomain
IA [auth O]IPR005824KOWDomain
JA [auth o]IPR019954Ubiquitin conserved siteConserved Site
JA [auth o]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
JA [auth o]IPR000626Ubiquitin-like domainDomain
JA [auth o]IPR019956Ubiquitin domainDomain
JA [auth o]IPR050158Ubiquitin and ubiquitin-likeFamily
JA [auth o]IPR001975Large ribosomal subunit protein eL40 domainDomain
JA [auth o]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
KA [auth P]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
KA [auth P]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
KA [auth P]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
KA [auth P]IPR000439Large ribosomal subunit protein eL15Family
LA [auth p]IPR007836Large ribosomal subunit protein eS32Family
MA [auth Q]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
MA [auth Q]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
MA [auth Q]IPR005822Large ribosomal subunit protein uL13Family
MA [auth Q]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
D [auth Y]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
D [auth Y]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
D [auth Y]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
NA [auth q]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
NA [auth q]IPR020189Translation elongation factor, IF5A C-terminalDomain
NA [auth q]IPR019769Translation elongation factor, IF5A, hypusine sitePTM
NA [auth q]IPR001884Translation elongation factor IF5A-likeFamily
NA [auth q]IPR048670Translation initiation factor 5A-like, N-terminalDomain
NA [auth q]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
NA [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
OA [auth R]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
OA [auth R]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
OA [auth R]IPR001063Large ribosomal subunit protein uL22Family
OA [auth R]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
QA [auth S]IPR021131Large ribosomal subunit protein uL15/eL18Domain
QA [auth S]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
QA [auth S]IPR000039Large ribosomal subunit protein eL18Family
QA [auth S]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
RA [auth s]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
RA [auth s]IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
RA [auth s]IPR047873Large ribosomal subunit protein uL16Family
RA [auth s]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site
RA [auth s]IPR016180Large ribosomal subunit protein uL16 domainDomain
SA [auth T]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
SA [auth T]IPR039547Large ribosomal subunit protein eL19Family
SA [auth T]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
SA [auth T]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
SA [auth T]IPR000196Large ribosomal subunit protein eL19 domainDomain
SA [auth T]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
TA [auth U]IPR028877Large ribosomal subunit protein eL20Family
TA [auth U]IPR023573Large ribosomal subunit protein eL20 domainDomain
TA [auth U]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
UA [auth V]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
UA [auth V]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
UA [auth V]IPR001147Large ribosomal subunit protein eL21Family
UA [auth V]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
VA [auth W]IPR002671Large ribosomal subunit protein eL22Family
VA [auth W]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
F [auth Z]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
F [auth Z]IPR013025Large ribosomal subunit protein uL23-likeFamily
F [auth Z]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
F [auth Z]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
F [auth Z]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
H [auth a]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
H [auth a]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
H [auth a]IPR005824KOWDomain
H [auth a]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
H [auth a]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
H [auth a]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site