5GUH
Crystal structure of silkworm PIWI-clade Argonaute Siwi bound to piRNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | N-terminal domain of argonaute | 8053638 | 4004602 | SCOP2 (2022-06-29) |
A | SCOP2 Family | PAZ domain | 8053639 | 4000853 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Mid domain of argonaute | 8053640 | 4004605 | SCOP2 (2022-06-29) |
A | SCOP2 Family | PIWI domain | 8053641 | 4002242 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | RNA-binding domain, RBD | 8053643 | 3000110 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | PAZ domain | 8053644 | 3001750 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Mid domain of argonaute | 8053645 | 3002210 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ribonuclease H-like | 8053646 | 3000143 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PAZ | e5guhA2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PAZ | ECOD (1.6) |
A | ArgoN | e5guhA3 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: ArgoN | ECOD (1.6) |
A | ArgoL1 | e5guhA4 | A: a+b two layers | X: Alpha-beta plaits | H: Argonaute, N-terminal domain (From Topology) | T: Argonaute, N-terminal domain | F: ArgoL1 | ECOD (1.6) |
A | Piwi_N | e5guhA1 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: Piwi_N | ECOD (1.6) |
A | Piwi_C | e5guhA5 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Piwi_C | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02171 | Piwi domain (Piwi) | Piwi domain | - | Family | |
PF02170 | PAZ domain (PAZ) | PAZ domain | This domain is named PAZ after the proteins Piwi Argonaut and Zwille. This domain is found in two families of proteins that are involved in post-transcriptional gene silencing. These are the Piwi family and the Dicer family, that includes the Carpel ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036397 | Ribonuclease H superfamily | Homologous Superfamily | |
IPR003100 | PAZ domain | Domain | |
IPR036085 | PAZ domain superfamily | Homologous Superfamily | |
IPR003165 | Piwi domain | Domain | |
IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily |