5GYK | pdb_00005gyk

Crystal Structure of Mdm12-deletion mutant

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	MMS1_N	e5gykF1	A: alpha bundles	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: MMS1_N	ECOD (develop294)
E	MMS1_N	e5gykE1	A: alpha bundles	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: MMS1_N	ECOD (develop294)
D	MMM1, PF26544	e5gykD1	A: alpha bundles	X: Rossmann-like	H: Rossmann-related	T: Aha1/BPI domain-like	F: MMM1, PF26544	ECOD (develop294)
C	SPRY	e5gykC1	A: alpha bundles	X: Type II ABC importer transmembrane domain fold	H: Type II ABC importer transmembrane domain fold	T: Type II ABC importer transmembrane domain fold	F: SPRY	ECOD (develop294)
B	MMS1_N	e5gykB1	A: alpha bundles	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: MMS1_N	ECOD (develop294)
A		e5gykA1	A: alpha bundles	X: Type II ABC importer transmembrane domain fold	H: DNA mismatch repair protein MutL regulatory subdomain	T: DNA mismatch repair protein MutL regulatory subdomain	F:	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF26544	Mitochondrial distribution and morphology protein 12 (Mdm12)	Mitochondrial distribution and morphology protein 12	Mitochondrial distribution and morphology protein 12 (Mdm12) is a component of the ERMES/MDM complex (composed of MMM1, MDM10, MDM12 and MDM34), which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria. Mdm12 is requir ...	Mitochondrial distribution and morphology protein 12 (Mdm12) is a component of the ERMES/MDM complex (composed of MMM1, MDM10, MDM12 and MDM34), which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria. Mdm12 is required for the interaction of the ER-resident membrane protein Mmm1 and the outer mitochondrial membrane-resident beta-barrel protein Mdm10 [1]. The Mdm12-Mmm1 subcomplex functions in the biogenesis of all mitochondrial outer membrane beta-barrel proteins, and acts in a late step after the SAM (sorting and assembly machinery) complex. The Mdm10-Mdm12-Mmm1 subcomplex further acts in the Tom40 (translocase of outer membrane 40)-specific pathway after the action of the Mdm12-Mmm1 complex. Mdm12 is essential for establishing and maintaining the structure of mitochondria and maintenance of mtDNA nucleoids [1,2]. MDM12 structure is similar to the so-called TULIPs (Tubular lipid binding proteins) domain fold, which is characteristic of a superfamily of lipid-binding proteins known as Aha1/BPI domain-like.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Mitochondrial distribution and morphology protein 12	binding lipid binding lipid transporter activity lipid transfer activity transporter activity	localization nitrogen compound transport transport macromolecule localization phospholipid transport lipid localization aminophospholipid transport lipid transport establishment of localization organophosphate ester transport cellular component organization mitochondrion distribution mitochondrion localization organelle organization localization nitrogen compound transport transport macromolecule localization phospholipid transport lipid localization aminophospholipid transport lipid transport establishment of localization organophosphate ester transport cellular component organization mitochondrion distribution mitochondrion localization organelle organization organelle localization organelle inheritance mitochondrion inheritance cellular process cellular component organization or biogenesis phospholipid homeostasis chemical homeostasis homeostatic process lipid homeostasis organelle localization by membrane tethering mitochondrion-endoplasmic reticulum membrane tethering membrane docking peroxisome organization establishment of protein localization cellular localization protein insertion into mitochondrial membrane outer mitochondrial membrane organization mitochondrial membrane organization establishment of localization in cell intracellular protein localization protein insertion into membrane mitochondrion organization membrane organization establishment of protein localization to membrane protein insertion into mitochondrial outer membrane localization within membrane establishment of protein localization to organelle protein localization to organelle protein localization to mitochondrion protein-containing complex organization cellular component biogenesis cellular component assembly protein-containing complex assembly mitochondrial outer membrane translocase complex assembly	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle organelle membrane contact site mitochondria-associated endoplasmic reticulum membrane contact site protein-containing complex mitochondrial membrane ERMES complex membrane protein complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle organelle membrane contact site mitochondria-associated endoplasmic reticulum membrane contact site protein-containing complex mitochondrial membrane ERMES complex membrane protein complex organelle outer membrane endomembrane system organelle envelope bounding membrane of organelle endoplasmic reticulum protein-containing complex mitochondrial protein-containing complex outer mitochondrial membrane protein complex membrane mitochondrial envelope mitochondrial outer membrane endoplasmic reticulum outer membrane organelle membrane cell periphery plasma membrane nucleus organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR031468	Synaptotagmin-like mitochondrial-lipid-binding domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR027532	Mitochondrial distribution and morphology protein 12	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.