5ID6 | pdb_00005id6

Structure of Cpf1/RNA Complex

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad5id6a4 All alpha proteins Putative dsDNA-binding domain from CRISPR-associated protein Cas12a / Cpf1-like Putative dsDNA-binding domain from CRISPR-associated protein Cas12a / Cpf1-like Putative dsDNA-binding domain from CRISPR-associated protein Cas12a / Cpf1-like Class II CRISPR effector Cpf1 (Lachnospiraceae bacterium ND2006 ) [TaxId: 1410628 ], SCOPe (2.08)
Ad5id6a3 All beta proteins Small protein B (SmpB) Oligonucleotide-binding domain from CRISPR-associated protein Cas12a / Cpf1-like Oligonucleotide-binding domain from CRISPR-associated protein Cas12a / Cpf1 Class II CRISPR effector Cpf1 (Lachnospiraceae bacterium ND2006 ) [TaxId: 1410628 ], SCOPe (2.08)
Ad5id6a1 Alpha and beta proteins (a/b) Ribonuclease H-like motif Ribonuclease H-like RuvC-like domain from CRISPR-associated protein Cas12a / Cpf1 Class II CRISPR effector Cpf1 (Lachnospiraceae bacterium ND2006 ) [TaxId: 1410628 ], SCOPe (2.08)
Ad5id6a2 Alpha and beta proteins (a+b) NUC domain from CRISPR-associated protein Cas12a / Cpf1-like NUC domain from CRISPR-associated protein Cas12a / Cpf1-like NUC domain from CRISPR-associated protein Cas12a / Cpf1 Class II CRISPR effector Cpf1 (Lachnospiraceae bacterium ND2006 ) [TaxId: 1410628 ], SCOPe (2.08)
Ad5id6a5 Multi-domain proteins (alpha and beta) N-terminal helical domains from CRISPR-associated protein Cas12a / Cpf1-like N-terminal helical domains from CRISPR-associated protein Cas12a / Cpf1-like N-terminal helical domains from CRISPR-associated protein Cas12a / Cpf1-like Class II CRISPR effector Cpf1 (Lachnospiraceae bacterium ND2006 ) [TaxId: 1410628 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ACBSe5id6A2 A: a/b three-layered sandwichesX: Transmembrane heme-binding four-helical bundleH: Baseplate wedge protein gp7 helical domainT: Baseplate wedge protein gp7 helical domainF: CBSECOD (v294.1)