5ILY | pdb_00005ily

Tobacco 5-epi-aristolochene synthase with BIS-TRIS buffer molecule and diphosphate (PPi)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5ilya1	All alpha proteins	alpha/alpha toroid	Terpenoid cyclases/Protein prenyltransferases	automated matches	automated matches	Common tobacco (Nicotiana tabacum ) [TaxId: 4097 ],	SCOPe (2.08)
A	d5ilya2	All alpha proteins	Terpenoid synthases	Terpenoid synthases	Terpenoid cyclase C-terminal domain	automated matches	Common tobacco (Nicotiana tabacum ) [TaxId: 4097 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Terpenoid synthases	8044538	3001615	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Terpenoid cyclases/Protein prenyltransferases	8044536	3001024	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PAS_9	e5ilyA1	A: alpha bundles	X: Ntn/PP2C	H: Ntn	T: Penicillin acylase, catalytic domain	F: PAS_9	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.600.10	Mainly Alpha	Orthogonal Bundle	Farnesyl Diphosphate Synthase	Farnesyl Diphosphate Synthase	CATH (4.3.0)
A	1.50.10.130	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase	Terpene synthase, N-terminal domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF03936	Terpene synthase family, metal binding domain (Terpene_synth_C)	Terpene synthase family, metal binding domain	It has been suggested that this gene family be designated tps (for terpene synthase) [1]. It has been split into six subgroups on the basis of phylogeny, called tpsa-tpsf. tpsa includes vetispiridiene synthase Swiss:Q39979, 5-epi- aristolochene synt ...	It has been suggested that this gene family be designated tps (for terpene synthase) [1]. It has been split into six subgroups on the basis of phylogeny, called tpsa-tpsf. tpsa includes vetispiridiene synthase Swiss:Q39979, 5-epi- aristolochene synthase, Swiss:Q40577 and (+)-delta-cadinene synthase Swiss:P93665. tpsb includes (-)-limonene synthase, Swiss:Q40322. tpsc includes kaurene synthase A, Swiss:O04408. tpsd includes taxadiene synthase, Swiss:Q41594, pinene synthase, Swiss:O24475 and myrcene synthase, Swiss:O24474. tpse includes kaurene synthase B. tpsf includes linalool synthase.	Domain
A	PF01397	Terpene synthase, N-terminal domain (Terpene_synth)	Terpene synthase, N-terminal domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	5-epi-aristolochene synthase	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding carbon-oxygen lyase activity, acting on phosphates lyase activity catalytic activity 5-epi-aristolochene synthase activity carbon-oxygen lyase activity terpene synthase activity	sesquiterpene biosynthetic process isoprenoid biosynthetic process lipid biosynthetic process terpene metabolic process primary metabolic process sesquiterpene metabolic process hydrocarbon metabolic process terpene biosynthetic process biosynthetic process metabolic process cellular process hydrocarbon biosynthetic process isoprenoid metabolic process lipid metabolic process sesquiterpene biosynthetic process isoprenoid biosynthetic process lipid biosynthetic process terpene metabolic process primary metabolic process sesquiterpene metabolic process hydrocarbon metabolic process terpene biosynthetic process biosynthetic process metabolic process cellular process hydrocarbon biosynthetic process isoprenoid metabolic process lipid metabolic process diterpenoid metabolic process terpenoid biosynthetic process diterpenoid biosynthetic process terpenoid metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR005630	Terpene synthase, metal-binding domain	Domain
A	IPR008949	Isoprenoid synthase domain superfamily	Homologous Superfamily
A	IPR036965	Terpene synthase, N-terminal domain superfamily	Homologous Superfamily
A	IPR034741	Terpene cyclase-like 1, C-terminal domain	Domain
A	IPR044814	Terpene cyclases, class 1, plant	Family
A	IPR001906	Terpene synthase, N-terminal domain	Domain
A	IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	Homologous Superfamily
A	IPR050148	Terpene synthase-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.