5IM4 | pdb_00005im4

Crystal structure of designed two-component self-assembling icosahedral cage I52-32

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
AA [auth d]	SCOP2B Superfamily	PTS system fructose IIA component-like	8083013	3000475	SCOP2B (2022-06-29)
BA [auth c]	SCOP2B Superfamily	PTS system fructose IIA component-like	8083013	3000475	SCOP2B (2022-06-29)
CA [auth Z]	SCOP2B Superfamily	PTS system fructose IIA component-like	8083013	3000475	SCOP2B (2022-06-29)
DA [auth a]	SCOP2B Superfamily	PTS system fructose IIA component-like	8083013	3000475	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	PTS system fructose IIA component-like	8083013	3000475	SCOP2B (2022-06-29)
G [auth H]	SCOP2B Superfamily	PTS system fructose IIA component-like	8083013	3000475	SCOP2B (2022-06-29)
H [auth G]	SCOP2B Superfamily	PTS system fructose IIA component-like	8083013	3000475	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	PTS system fructose IIA component-like	8083013	3000475	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	PTS system fructose IIA component-like	8083013	3000475	SCOP2B (2022-06-29)
JA [auth j]	SCOP2B Superfamily	PTS system fructose IIA component-like	8083013	3000475	SCOP2B (2022-06-29)
KA [auth k]	SCOP2B Superfamily	PTS system fructose IIA component-like	8083013	3000475	SCOP2B (2022-06-29)
LA [auth m]	SCOP2B Superfamily	PTS system fructose IIA component-like	8083013	3000475	SCOP2B (2022-06-29)
MA [auth l]	SCOP2B Superfamily	PTS system fructose IIA component-like	8083013	3000475	SCOP2B (2022-06-29)
NA [auth n]	SCOP2B Superfamily	PTS system fructose IIA component-like	8083013	3000475	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	PTS system fructose IIA component-like	8083013	3000475	SCOP2B (2022-06-29)
R [auth S]	SCOP2B Superfamily	PTS system fructose IIA component-like	8083013	3000475	SCOP2B (2022-06-29)
S [auth R]	SCOP2B Superfamily	PTS system fructose IIA component-like	8083013	3000475	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	PTS system fructose IIA component-like	8083013	3000475	SCOP2B (2022-06-29)
Z [auth b]	SCOP2B Superfamily	PTS system fructose IIA component-like	8083013	3000475	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	PTS system fructose IIA component-like	8083013	3000475	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	e5im4A1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
B [auth E]	e5im4E1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
C	e5im4C1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
D [auth B]	e5im4B1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
E [auth D]	e5im4D1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
FA [auth f]	e5im4f1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
GA [auth h]	e5im4h1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
HA [auth g]	e5im4g1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
IA [auth i]	e5im4i1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
K	e5im4K1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
L	e5im4L1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
M [auth N]	e5im4N1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
N [auth M]	e5im4M1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
O	e5im4O1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
U	e5im4U1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
V	e5im4V1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
W [auth X]	e5im4X1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
X [auth W]	e5im4W1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
Y	e5im4Y1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
EA [auth e]	e5im4e1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
AA [auth d]	e5im4d1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
BA [auth c]	e5im4c1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
CA [auth Z]	e5im4Z1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
DA [auth a]	e5im4a1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
F	e5im4F1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
G [auth H]	e5im4H1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
H [auth G]	e5im4G1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
I	e5im4I1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
J	e5im4J1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
JA [auth j]	e5im4j1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
KA [auth k]	e5im4k1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
LA [auth m]	e5im4m1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
MA [auth l]	e5im4l1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
NA [auth n]	e5im4n1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
P	e5im4P1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
R [auth S]	e5im4S1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
S [auth R]	e5im4R1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
T	e5im4T1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
Z [auth b]	e5im4b1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)
Q	e5im4Q1	A: alpha bundles	X: Rossmann-like	H: RIFT-related	T: acid protease	F:	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.960	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Lumazine/riboflavin synthase	CATH (4.3.0)
B [auth E]	3.40.50.960	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Lumazine/riboflavin synthase	CATH (4.3.0)
C	3.40.50.960	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Lumazine/riboflavin synthase	CATH (4.3.0)
D [auth B]	3.40.50.960	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Lumazine/riboflavin synthase	CATH (4.3.0)
E [auth D]	3.40.50.960	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Lumazine/riboflavin synthase	CATH (4.3.0)
FA [auth f]	3.40.50.960	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Lumazine/riboflavin synthase	CATH (4.3.0)
GA [auth h]	3.40.50.960	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Lumazine/riboflavin synthase	CATH (4.3.0)
HA [auth g]	3.40.50.960	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Lumazine/riboflavin synthase	CATH (4.3.0)
IA [auth i]	3.40.50.960	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Lumazine/riboflavin synthase	CATH (4.3.0)
K	3.40.50.960	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Lumazine/riboflavin synthase	CATH (4.3.0)
L	3.40.50.960	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Lumazine/riboflavin synthase	CATH (4.3.0)
M [auth N]	3.40.50.960	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Lumazine/riboflavin synthase	CATH (4.3.0)
N [auth M]	3.40.50.960	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Lumazine/riboflavin synthase	CATH (4.3.0)
O	3.40.50.960	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Lumazine/riboflavin synthase	CATH (4.3.0)
U	3.40.50.960	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Lumazine/riboflavin synthase	CATH (4.3.0)
V	3.40.50.960	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Lumazine/riboflavin synthase	CATH (4.3.0)
W [auth X]	3.40.50.960	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Lumazine/riboflavin synthase	CATH (4.3.0)
X [auth W]	3.40.50.960	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Lumazine/riboflavin synthase	CATH (4.3.0)
Y	3.40.50.960	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Lumazine/riboflavin synthase	CATH (4.3.0)
EA [auth e]	3.40.50.960	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Lumazine/riboflavin synthase	CATH (4.3.0)
AA [auth d]	3.40.50.510	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphotransferase system, mannose-type IIA component	CATH (4.3.0)
BA [auth c]	3.40.50.510	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphotransferase system, mannose-type IIA component	CATH (4.3.0)
CA [auth Z]	3.40.50.510	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphotransferase system, mannose-type IIA component	CATH (4.3.0)
DA [auth a]	3.40.50.510	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphotransferase system, mannose-type IIA component	CATH (4.3.0)
F	3.40.50.510	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphotransferase system, mannose-type IIA component	CATH (4.3.0)
G [auth H]	3.40.50.510	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphotransferase system, mannose-type IIA component	CATH (4.3.0)
H [auth G]	3.40.50.510	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphotransferase system, mannose-type IIA component	CATH (4.3.0)
I	3.40.50.510	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphotransferase system, mannose-type IIA component	CATH (4.3.0)
J	3.40.50.510	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphotransferase system, mannose-type IIA component	CATH (4.3.0)
JA [auth j]	3.40.50.510	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphotransferase system, mannose-type IIA component	CATH (4.3.0)
KA [auth k]	3.40.50.510	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphotransferase system, mannose-type IIA component	CATH (4.3.0)
LA [auth m]	3.40.50.510	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphotransferase system, mannose-type IIA component	CATH (4.3.0)
MA [auth l]	3.40.50.510	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphotransferase system, mannose-type IIA component	CATH (4.3.0)
NA [auth n]	3.40.50.510	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphotransferase system, mannose-type IIA component	CATH (4.3.0)
P	3.40.50.510	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphotransferase system, mannose-type IIA component	CATH (4.3.0)
R [auth S]	3.40.50.510	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphotransferase system, mannose-type IIA component	CATH (4.3.0)
S [auth R]	3.40.50.510	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphotransferase system, mannose-type IIA component	CATH (4.3.0)
T	3.40.50.510	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphotransferase system, mannose-type IIA component	CATH (4.3.0)
Z [auth b]	3.40.50.510	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphotransferase system, mannose-type IIA component	CATH (4.3.0)
Q	3.40.50.510	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Phosphotransferase system, mannose-type IIA component	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth d], BA [auth c], CA [auth Z], DA [auth a], F, AA [auth d], BA [auth c], CA [auth Z], DA [auth a], F, G [auth H], H [auth G], I, J, JA [auth j], KA [auth k], LA [auth m], MA [auth l], NA [auth n], P, Q, R [auth S], S [auth R], T, Z [auth b]	PF03610	PTS system fructose IIA component (EIIA-man)	PTS system fructose IIA component	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth E], C, D [auth B], E [auth D], A, B [auth E], C, D [auth B], E [auth D], EA [auth e], FA [auth f], GA [auth h], HA [auth g], IA [auth i], K, L, M [auth N], N [auth M], O, U, V, W [auth X], X [auth W], Y	6,7-dimethyl-8-ribityllumazine synthase	-	-	-
AA [auth d], BA [auth c], CA [auth Z], DA [auth a], F, AA [auth d], BA [auth c], CA [auth Z], DA [auth a], F, G [auth H], H [auth G], I, J, JA [auth j], KA [auth k], LA [auth m], MA [auth l], NA [auth n], P, Q, R [auth S], S [auth R], T, Z [auth b]	Phosphotransferase system, mannose/fructose-specific component IIA	kinase activity transferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	import into cell phosphoenolpyruvate-dependent sugar phosphotransferase system transport import across plasma membrane carbohydrate import across plasma membrane carbohydrate transport establishment of localization transmembrane transport localization cellular process carbohydrate transmembrane transport	cellular anatomical structure membrane intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth d], BA [auth c], CA [auth Z], DA [auth a], F, AA [auth d], BA [auth c], CA [auth Z], DA [auth a], F, G [auth H], H [auth G], I, J, JA [auth j], KA [auth k], LA [auth m], MA [auth l], NA [auth n], P, Q, R [auth S], S [auth R], T, Z [auth b]	IPR036662	Phosphotransferase system, mannose-type IIA component superfamily	Homologous Superfamily
AA [auth d], BA [auth c], CA [auth Z], DA [auth a], F, AA [auth d], BA [auth c], CA [auth Z], DA [auth a], F, G [auth H], H [auth G], I, J, JA [auth j], KA [auth k], LA [auth m], MA [auth l], NA [auth n], P, Q, R [auth S], S [auth R], T, Z [auth b]	IPR004701	Phosphotransferase system, mannose-type IIA component	Domain
AA [auth d], BA [auth c], CA [auth Z], DA [auth a], F, AA [auth d], BA [auth c], CA [auth Z], DA [auth a], F, G [auth H], H [auth G], I, J, JA [auth j], KA [auth k], LA [auth m], MA [auth l], NA [auth n], P, Q, R [auth S], S [auth R], T, Z [auth b]	IPR051471	Bacterial PTS system sugar-specific components	Family
AA [auth d], BA [auth c], CA [auth Z], DA [auth a], F, AA [auth d], BA [auth c], CA [auth Z], DA [auth a], F, G [auth H], H [auth G], I, J, JA [auth j], KA [auth k], LA [auth m], MA [auth l], NA [auth n], P, Q, R [auth S], S [auth R], T, Z [auth b]	IPR033887	PTS system mannose/sorbose specific IIA subunit	Domain

Prepare Data

Validate Data

Deposit Data

Help and Resources

.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 5IM4 | pdb_00005im4

Crystal structure of designed two-component self-assembling icosahedral cage I52-32

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

5IM4 | pdb_00005im4