Annotations: 5IWZ

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	SYCP2_ARLD	e5iwzA1	A: alpha bundles	X: SMI1/KNR4-like	H: SMI1/KNR4-like	T: SMI1/KNR4-like	F: SYCP2_ARLD	ECOD (develop294)
A	SMI1_KNR4	e5iwzA2	A: alpha bundles	X: SMI1/KNR4-like	H: SMI1/KNR4-like	T: SMI1/KNR4-like	F: SMI1_KNR4	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF18581	Synaptonemal complex 2 armadillo-repeat-like domain (SYCP2_ARLD)	Synaptonemal complex 2 armadillo-repeat-like domain	-	Repeat
A	PF18584	Synaptonemal complex 2 Spt16M-like domain (SYCP2_SLD)	Synaptonemal complex 2 Spt16M-like domain	Synaptonemal complex protein 2 (SYCP2) N-terminal region contains two separate subdomains an ARLD (armadillo-repeat-like domain) and an SLD (Spt16M-like domain). The SLD structure is highly similar to the middle domain of the histone chaperone FACT. ...	Synaptonemal complex protein 2 (SYCP2) N-terminal region contains two separate subdomains an ARLD (armadillo-repeat-like domain) and an SLD (Spt16M-like domain). The SLD structure is highly similar to the middle domain of the histone chaperone FACT. It consists of a twisted ten-stranded beta-sheet flanked by two helices. Since the SLD domain structurally resembles Spt16M, which is known as the well-recognized histone protein H2A-H2B; it is speculated that the SLD may be involved in chromatin binding [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Synaptonemal complex protein 2	DNA binding binding nucleic acid binding	developmental process anatomical structure morphogenesis anatomical structure development animal organ development animal organ morphogenesis sexual reproduction reproductive process fertilization cellular process cell division regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process developmental process anatomical structure morphogenesis anatomical structure development animal organ development animal organ morphogenesis sexual reproduction reproductive process fertilization cellular process cell division regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death organelle fission meiotic cell cycle multicellular organismal reproductive process female gamete generation meiotic cell cycle process gamete generation cellular component organization nuclear division organelle organization female meiotic nuclear division meiotic nuclear division cellular component organization or biogenesis cell cycle cell cycle process male meiotic nuclear division male gamete generation male genitalia morphogenesis genitalia development multicellular organismal process reproductive system development male anatomical structure morphogenesis sex differentiation developmental process involved in reproduction male sex differentiation multicellular organism development reproductive structure development male genitalia development genitalia morphogenesis system development	membrane-bounded organelle condensed nuclear chromosome intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle nuclear chromosome chromosome intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membrane-bounded organelle condensed nuclear chromosome intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle nuclear chromosome chromosome intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle synaptonemal structure synaptonemal complex condensed chromosome nuclear lumen lateral element chromosomal region chromosome, centromeric region condensed chromosome, centromeric region nucleoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR040560	Synaptonemal complex protein 2, Spt16M-like domain	Domain
A	IPR024835	Synaptonemal complex protein 2-like	Family
A	IPR041322	Synaptonemal complex protein 2, armadillo-repeat-like domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.