5KEW | pdb_00005kew

Vibrio parahaemolyticus VtrA/VtrC complex bound to the bile salt taurodeoxycholate

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	EUF08410	e5kewA1	A: a+b two layers	X: dsRBD-like	H: VtrA protein periplasmic domain (From Topology)	T: VtrA protein periplasmic domain	F: EUF08410	ECOD (1.6)
C	EUF08410	e5kewC1	A: a+b two layers	X: dsRBD-like	H: VtrA protein periplasmic domain (From Topology)	T: VtrA protein periplasmic domain	F: EUF08410	ECOD (1.6)
E	EUF08410	e5kewE1	A: a+b two layers	X: dsRBD-like	H: VtrA protein periplasmic domain (From Topology)	T: VtrA protein periplasmic domain	F: EUF08410	ECOD (1.6)
B	EUF07597	e5kewB1	A: beta barrels	X: Lipocalins/Streptavidin	H: Lipocalins (From Topology)	T: Lipocalins	F: EUF07597	ECOD (1.6)
D	EUF07597	e5kewD1	A: beta barrels	X: Lipocalins/Streptavidin	H: Lipocalins (From Topology)	T: Lipocalins	F: EUF07597	ECOD (1.6)
F	EUF07597	e5kewF1	A: beta barrels	X: Lipocalins/Streptavidin	H: Lipocalins (From Topology)	T: Lipocalins	F: EUF07597	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C, E	PF22100	VtrA C-terminal periplasmic domain (VtrA_C)	VtrA C-terminal periplasmic domain	VtrA forms a complex with VtrC on the surface of the membrane that surrounds the bacterial cell. These two proteins create a platform that can bind to bile salts and trigger the release of bacterial toxins. This entry represents the C-terminal peripl ...	VtrA forms a complex with VtrC on the surface of the membrane that surrounds the bacterial cell. These two proteins create a platform that can bind to bile salts and trigger the release of bacterial toxins. This entry represents the C-terminal periplasmic domain of VtrA that interacts with the VtrC periplasmic domain. The VtrA periplasmic domain adopts an alpha/beta structure consisting of a five-stranded antiparallel beta-sheet and two helices packed on one side of it [1].	Domain
B, D, F	PF22280	VtrC lipocalin-like domain (VtrC)	VtrC lipocalin-like domain	This entry represents a lipocalin-like beta barrel domain found in the Vibrio parahaemolyticus VtrC protein [1]. VtrC, along with VtrA and VtrB, are required for activating the virulence type III secretion system 2 in response to bile salts. The VtrA ...	This entry represents a lipocalin-like beta barrel domain found in the Vibrio parahaemolyticus VtrC protein [1]. VtrC, along with VtrA and VtrB, are required for activating the virulence type III secretion system 2 in response to bile salts. The VtrA/VtrC complex activates VtrB in the presence of bile salts. The crystal structure of the periplasmic domains of the VtrA/VtrC heterodimer reveals a beta-barrel with a hydrophobic inner chamber [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C, E	VtrA Protein	DNA binding binding nucleic acid binding	cellular response to stimulus regulation of biological process phosphorelay signal transduction system regulation of cellular process response to stimulus signaling biological regulation intracellular signal transduction cell communication cellular process signal transduction RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process cellular response to stimulus regulation of biological process phosphorelay signal transduction system regulation of cellular process response to stimulus signaling biological regulation intracellular signal transduction cell communication cellular process signal transduction RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process	cellular anatomical structure membrane
B, D, F	VtrC Protein	cation binding ion binding binding metal ion binding small molecule binding	-	cellular anatomical structure membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E	IPR001867	OmpR/PhoB-type DNA-binding domain	Domain
A, C, E	IPR016032	Signal transduction response regulator, C-terminal effector	Homologous Superfamily
A, C, E	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A, C, E	IPR054325	VtrA, C-terminal periplasmic domain	Domain
B, D, F	IPR054526	VtrC-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.