5L5G | pdb_00005l5g

Plexin A2 full extracellular region, domains 1 to 8 modeled, data to 10 angstrom

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e5l5gB1	A: TIM beta/alpha-barrel	X: TIM barrels	H: TIM barrels	T: PSI	F:	ECOD (20:10:01)
B		e5l5gB4	A: TIM beta/alpha-barrel	X: TIM barrels	H: TIM barrels	T: GHL10	F:	ECOD (20:10:01)
C		e5l5gC1	A: MocoBD/DmpA-related	X: MocoBD/DmpA-related	H: Retrovirus capsid protein-C	T: PSI_PlexinA-B	F:	ECOD (20:10:01)
C		e5l5gC5	A: MocoBD/DmpA-related	X: MocoBD/DmpA-related	H: Retrovirus capsid protein-C	T: TetR_N	F:	ECOD (20:10:01)
D		e5l5gD1	A: HTH	X: HTH	H: winged helix domain	T: p450	F:	ECOD (20:10:01)
A		e5l5gA1	A: HTH	X: HTH	H: winged helix domain	T: p450	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01437	Plexin repeat (PSI)	Plexin repeat	-	Family
A, B, C, D	PF24479	Plexin A/B, PSI domain (PSI_PlexinA-B)	Plexin A/B, PSI domain	This entry represents a PSI domain found in Plexin A, B and related proteins. These are neuronal receptors for the axon guidance regulators Semaphorins. Semaphorin-plexin interactions play central roles in regulating processes such as neuronal axon g ...	This entry represents a PSI domain found in Plexin A, B and related proteins. These are neuronal receptors for the axon guidance regulators Semaphorins. Semaphorin-plexin interactions play central roles in regulating processes such as neuronal axon guidance, angiogenesis and immune responses [1,2].	Domain
A, B, C, D	PF01833	IPT/TIG domain (TIG)	IPT/TIG domain	This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family d ...	This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognise a significant number of members.	Domain
A, B, C, D	PF01403	Sema domain (Sema)	Sema domain	-	Repeat
A, B, C, D	PF18020	TIG domain found in plexin (TIG_2)	TIG domain found in plexin	This entry represents a TIG domain found in plexin proteins. TIG domains have an Ig-like fold.	Domain
A, B, C, D	PF17960	TIG domain (TIG_plexin)	TIG domain	This entry represents an TIG or IPT domain (Ig domain shared by Plexins and Transcription factors) found in plexins [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Plexin-A2	molecular transducer activity transmembrane signaling receptor activity signaling receptor activity semaphorin receptor activity identical protein binding protein binding binding	developmental process multicellular organismal process limb development appendage development limb bud formation anatomical structure morphogenesis multicellular organism development appendage morphogenesis anatomical structure formation involved in morphogenesis anatomical structure development limb morphogenesis localization centrosome localization microtubule organizing center localization developmental process multicellular organismal process limb development appendage development limb bud formation anatomical structure morphogenesis multicellular organism development appendage morphogenesis anatomical structure formation involved in morphogenesis anatomical structure development limb morphogenesis localization centrosome localization microtubule organizing center localization cellular process somitogenesis epithelium development chordate embryonic development segmentation anterior/posterior pattern specification pattern specification process embryo development tissue development regionalization embryo development ending in birth or egg hatching somite development regulation of biological process regulation of cell motility regulation of cellular process regulation of locomotion regulation of cell migration biological regulation cell migration cell motility locomotion head development animal organ development brain development nervous system development central nervous system development cerebellar granule cell precursor tangential migration hindbrain development hindbrain tangential cell migration cell migration in hindbrain system development pharyngeal system development cellular response to stimulus cell surface receptor signaling pathway response to stimulus signaling signal transduction cell communication semaphorin-plexin signaling pathway neural tube development tube development cellular component organization cellular component biogenesis cell junction organization cellular component assembly cell junction assembly synapse organization cellular component organization or biogenesis synapse assembly	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex semaphorin receptor complex receptor complex extracellular matrix external encapsulating structure

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR002909	IPT domain	Domain
A, B, C, D	IPR042826	Plexin-A2, sema domain	Domain
A, B, C, D	IPR041362	Plexin, TIG domain 2	Domain
A, B, C, D	IPR016201	PSI domain	Domain
A, B, C, D	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A, B, C, D	IPR008936	Rho GTPase activation protein	Homologous Superfamily
A, B, C, D	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A, B, C, D	IPR002165	Plexin repeat	Repeat
A, B, C, D	IPR041019	Plexin, TIG domain 1	Domain
A, B, C, D	IPR031148	Plexin family	Family
A, B, C, D	IPR046800	Plexin, cytoplasmic RhoGTPase-binding domain	Domain
A, B, C, D	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B, C, D	IPR013548	Plexin, cytoplasmic RasGAP domain	Domain
A, B, C, D	IPR036352	Sema domain superfamily	Homologous Superfamily
A, B, C, D	IPR001627	Sema domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.