5LPI | pdb_00005lpi

Structure of the zinc finger array of Cep104

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth B]	PCRF	e5lpiB1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PCRF	ECOD (develop294)
C [auth A]	PCRF	e5lpiA1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PCRF	ECOD (develop294)
B [auth C]	CEP104_ZnF	e5lpiC1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CEP104_ZnF	ECOD (develop294)
A [auth D]	PCRF	e5lpiD1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PCRF	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth D], B [auth C], C [auth A], D [auth B]	PF21039	Centrosomal protein CEP104, ZnF (CEP104_ZnF)	Centrosomal protein CEP104, ZnF	Centrosomal protein CEP104 localises to the distal end of centrioles that interacts through its N- and C-terminal region, respectively, with the distal end proteins Cep97 and CP110 [1]. It is required for ciliogenesis and for structural integrity at ...	Centrosomal protein CEP104 localises to the distal end of centrioles that interacts through its N- and C-terminal region, respectively, with the distal end proteins Cep97 and CP110 [1]. It is required for ciliogenesis and for structural integrity at the ciliary tip, being involved in regulating microtubule length in cilia. This is a multidomain protein that consists of an N-terminal all-beta domain, a central all-alpha-helical HEAT repeat domain and a C-terminal array of four zinc finger domains [1], the latter represented in this entry. This ZnF domain interacts with kinase Nek1 which competes with CP110 [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth D], B [auth C], C [auth A], D [auth B]	Centrosomal protein of 104 kDa	-	-	intracellular organelle microtubule organizing center cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle centriole intracellular membraneless organelle microtubule cytoskeleton membrane-bounded organelle cell projection cilium plasma membrane bounded cell projection intracellular organelle microtubule organizing center cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle centriole intracellular membraneless organelle microtubule cytoskeleton membrane-bounded organelle cell projection cilium plasma membrane bounded cell projection spindle spindle pole centrosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth D], B [auth C], C [auth A], D [auth B]	IPR048739	Centrosomal protein CEP104, N-terminal domain	Domain
A [auth D], B [auth C], C [auth A], D [auth B]	IPR011989	Armadillo-like helical	Homologous Superfamily
A [auth D], B [auth C], C [auth A], D [auth B]	IPR016024	Armadillo-type fold	Homologous Superfamily
A [auth D], B [auth C], C [auth A], D [auth B]	IPR052607	Centrosomal protein 104 kDa-like	Family
A [auth D], B [auth C], C [auth A], D [auth B]	IPR048738	Centrosomal protein CEP104, Zn finger domain	Domain
A [auth D], B [auth C], C [auth A], D [auth B]	IPR008979	Galactose-binding-like domain superfamily	Homologous Superfamily
A [auth D], B [auth C], C [auth A], D [auth B]	IPR034085	TOG domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth D], B [auth C], C [auth A], D [auth B]	Pharos: O60308	Joubert syndrome adenoma Familial aplasia of the vermis intellectual disability lung adenocarcinoma osteosarcoma gastric cancer lung cancer psoriasis exocrine pancreatic carcinoma gastric carcinoma Joubert syndrome 25 malignant pancreatic neoplasm tuberculosis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.