5MGT | pdb_00005mgt

Complex of human NKR-P1 and LLT1 in deglycosylated forms

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d5mgtc1	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d5mgtc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d5mgtf_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E	d5mgte_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d5mgtd_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d5mgtb_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d5mgta_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	C-type lectin-like	8065474	3001261	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	C-type lectin-like	8065474	3001261	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	C-type lectin-like	8065474	3001261	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	C-type lectin-like	8065474	3001261	SCOP2B (2022-06-29)
B	SCOP2 Family	C-type lectin domain	8065475	4002453	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	C-type lectin-like	8065476	3001261	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	C-type lectin-like	8065476	3001261	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	Pept_tRNA_hydro	e5mgtC1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Pept_tRNA_hydro	ECOD (develop294)
F	Pept_tRNA_hydro	e5mgtF1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Pept_tRNA_hydro	ECOD (develop294)
E	Pept_tRNA_hydro	e5mgtE1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Pept_tRNA_hydro	ECOD (develop294)
D	Pept_tRNA_hydro	e5mgtD1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Pept_tRNA_hydro	ECOD (develop294)
B	Pept_tRNA_hydro	e5mgtB1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Pept_tRNA_hydro	ECOD (develop294)
A	Pept_tRNA_hydro	e5mgtA1	A: alpha bundles	X: Phosphorylase/hydrolase-like	H: Peptidyl-tRNA hydrolase-like	T: Peptidyl-tRNA hydrolase-like	F: Pept_tRNA_hydro	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (utative)
F	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (utative)
E	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (utative)
D	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (utative)
B	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (utative)
A	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C, D, E, F	PF00059	Lectin C-type domain (Lectin_C)	Lectin C-type domain	This family includes both long and short form C-type	Domain
A, B	PF00059	Lectin C-type domain (Lectin_C)	Lectin C-type domain	This family includes both long and short form C-type	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D, E, F	Killer cell lectin-like receptor subfamily B member 1	binding carbohydrate binding molecular transducer activity signaling receptor activity transmembrane signaling receptor activity	regulation of immune effector process lymphocyte mediated immunity regulation of defense response regulation of natural killer cell mediated cytotoxicity regulation of response to biotic stimulus regulation of cellular process biological process involved in interspecies interaction between organisms response to stimulus regulation of response to external stimulus response to biotic stimulus response to stress regulation of response to stress innate immune response leukocyte mediated immunity regulation of immune effector process lymphocyte mediated immunity regulation of defense response regulation of natural killer cell mediated cytotoxicity regulation of response to biotic stimulus regulation of cellular process biological process involved in interspecies interaction between organisms response to stimulus regulation of response to external stimulus response to biotic stimulus response to stress regulation of response to stress innate immune response leukocyte mediated immunity regulation of immune system process response to external biotic stimulus natural killer cell mediated immunity regulation of biological process regulation of natural killer cell mediated immunity immune response response to other organism defense response regulation of innate immune response regulation of leukocyte mediated cytotoxicity biological regulation defense response to symbiont response to external stimulus leukocyte mediated cytotoxicity immune effector process regulation of leukocyte mediated immunity regulation of lymphocyte mediated immunity regulation of response to stimulus immune system process defense response to other organism natural killer cell mediated cytotoxicity regulation of immune response regulation of cell killing cellular process cell killing cellular response to stimulus cell surface receptor signaling pathway signaling signal transduction cell communication	cell surface cellular anatomical structure cell periphery plasma membrane membrane
A, B	C-type lectin domain family 2 member D	binding carbohydrate binding molecular transducer activity transmembrane signaling receptor activity signaling receptor activity	cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cellular process signal transduction cell communication	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle endoplasmic reticulum cytoplasm intracellular membrane-bounded organelle cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle endoplasmic reticulum cytoplasm intracellular membrane-bounded organelle endomembrane system

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D, E, F	IPR001304	C-type lectin-like	Domain
C, D, E, F	IPR016186	C-type lectin-like/link domain superfamily	Homologous Superfamily
C, D, E, F	IPR033992	Natural killer cell receptor-like, C-type lectin-like domain	Domain
C, D, E, F	IPR051527	Killer cell lectin-like receptor subfamily B	Family
C, D, E, F	IPR016187	C-type lectin fold	Homologous Superfamily
A, B	IPR050828	C-type lectin and matrix domain-containing protein	Family
A, B	IPR016187	C-type lectin fold	Homologous Superfamily
A, B	IPR001304	C-type lectin-like	Domain
A, B	IPR016186	C-type lectin-like/link domain superfamily	Homologous Superfamily
A, B	IPR033992	Natural killer cell receptor-like, C-type lectin-like domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C, D, E, F	Pharos: Q12918	melanoma psoriasis breast cancer exocrine pancreatic carcinoma interstitial cystitis malignant colon neoplasm malignant pancreatic neoplasm non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma sarcoidosis cutaneous lupus erythematosus Hashimoto thyroiditis lung adenocarcinoma malignant glioma osteosarcoma melanoma psoriasis breast cancer exocrine pancreatic carcinoma interstitial cystitis malignant colon neoplasm malignant pancreatic neoplasm non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma sarcoidosis cutaneous lupus erythematosus Hashimoto thyroiditis lung adenocarcinoma malignant glioma osteosarcoma pancreatic intraductal papillary-mucinous neoplasm Sjogren syndrome cutaneous melanoma Hodgkins lymphoma lung carcinoma malignant mesothelioma nasopharyngeal carcinoma pancreatic ductal adenocarcinoma
A, B	Pharos: Q9UHP7	cutaneous lupus erythematosus Hodgkins lymphoma lung cancer osteosarcoma Hashimoto thyroiditis hypothyroidism lung carcinoma psoriasis head and neck cancer interstitial cystitis medulloblastoma tuberculosis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.