Structural basis for maintenance of bacterial outer membrane lipid asymmetry
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | d5nupc_ | Membrane and cell surface proteins and peptides | Transmembrane beta-barrels | Porins | Porin | automated matches | (Klebsiella pneumoniae ) [TaxId: 573 ], | SCOPe (2.08) |
| B | d5nupb_ | Membrane and cell surface proteins and peptides | Transmembrane beta-barrels | Porins | Porin | automated matches | (Klebsiella pneumoniae ) [TaxId: 573 ], | SCOPe (2.08) |
| A | d5nupa_ | Membrane and cell surface proteins and peptides | Transmembrane beta-barrels | Porins | Porin | automated matches | (Klebsiella pneumoniae ) [TaxId: 573 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C | SCOP2B Superfamily | Porins | 8097754 | 3000224 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Porins | 8097754 | 3000224 | SCOP2B (2022-06-29) |
| A | SCOP2 Family | Porin | 8097753 | 4003061 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Porins | 8097754 | 3000224 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| F | 3Beta_HSD, Polysacc_synt_2 | e5nupF1 | A: alpha bundles | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: 3Beta_HSD, Polysacc_synt_2 | ECOD (develop294) |
| E | 3Beta_HSD, Polysacc_synt_2 | e5nupE1 | A: alpha bundles | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: 3Beta_HSD, Polysacc_synt_2 | ECOD (develop294) |
| D | 3Beta_HSD, Polysacc_synt_2 | e5nupD1 | A: alpha bundles | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: 3Beta_HSD, Polysacc_synt_2 | ECOD (develop294) |
| C | Peptidase_S26 | e5nupC1 | A: alpha bundles | X: TIM beta/alpha-barrel | H: TIM barrels | T: TIM barrels | F: Peptidase_S26 | ECOD (develop294) |
| B | Peptidase_S26 | e5nupB1 | A: alpha bundles | X: TIM beta/alpha-barrel | H: TIM barrels | T: TIM barrels | F: Peptidase_S26 | ECOD (develop294) |
| A | Peptidase_S26 | e5nupA1 | A: alpha bundles | X: TIM beta/alpha-barrel | H: TIM barrels | T: TIM barrels | F: Peptidase_S26 | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C | 2.40.160.10 | Mainly Beta | Beta Barrel | Porin | Porin | CATH (4.3.0) |
| B | 2.40.160.10 | Mainly Beta | Beta Barrel | Porin | Porin | CATH (4.3.0) |
| A | 2.40.160.10 | Mainly Beta | Beta Barrel | Porin | Porin | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| ABC transporter permease | - |
| ||
| OmpK36 |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR007428 | MlaA lipoprotein | Family | |
| IPR050298 | Gram-negative bacterial outer membrane porin | Family | |
| IPR023614 | Porin domain superfamily | Homologous Superfamily | |
| IPR001702 | Porin, Gram-negative type | Family | |
| IPR013793 | Porin, Gram-negative type, conserved site | Conserved Site | |
| IPR001897 | Porin, gammaproteobacterial | Family |
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Beta-barrel transmembrane | Trimeric porins (n=16,S=20) | General Bacterial Porin (GBP) |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Outer Membrane Proteins | MlaA lipid transport protein in complex with OmpF |
