Structure of KSRP in context of Trypanosoma cruzi 40S
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| H [auth O] | SCOP2 Family | Ribosomal protein S7 | 8066022 | 4001112 | SCOP2 (2022-06-29) |
| H [auth O] | SCOP2 Superfamily | Ribosomal protein S7 | 8066023 | 3000799 | SCOP2 (2022-06-29) |
| E [auth u] | SCOP2 Family | Ribosomal protein S13 | 8101628 | 4000260 | SCOP2 (2022-06-29) |
| E [auth u] | SCOP2 Superfamily | S13-like H2TH domain | 8101629 | 3000053 | SCOP2 (2022-06-29) |
| GA [auth c] | SCOP2 Family | Ribosomal protein S30e-like | 8099465 | 4005067 | SCOP2 (2022-06-29) |
| GA [auth c] | SCOP2 Superfamily | Ribosomal protein S30e-like | 8099466 | 3002190 | SCOP2 (2022-06-29) |
| FA [auth o] | SCOP2 Family | Rps19E-like | 8099471 | 4000222 | SCOP2 (2022-06-29) |
| FA [auth o] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8099472 | 3000034 | SCOP2 (2022-06-29) |
| EA [auth n] | SCOP2 Family | eS10-like | 8099477 | 4007434 | SCOP2 (2022-06-29) |
| EA [auth n] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8099478 | 3000034 | SCOP2 (2022-06-29) |
| C [auth r] | SCOP2 Family | Translational machinery components | 8099469 | 4000951 | SCOP2 (2022-06-29) |
| C [auth r] | SCOP2 Superfamily | Ribosomal protein S5 domain 2-like | 8099470 | 3000100 | SCOP2 (2022-06-29) |
| CA [auth l] | SCOP2 Family | Ribosomal protein S10 | 8099461 | 4001240 | SCOP2 (2022-06-29) |
| CA [auth l] | SCOP2 Superfamily | Ribosomal protein S10 | 8099462 | 3001336 | SCOP2 (2022-06-29) |
| Y [auth i] | SCOP2 Family | L30e/L7ae ribosomal proteins | 8099459 | 4001513 | SCOP2 (2022-06-29) |
| Y [auth i] | SCOP2 Superfamily | L30e-like | 8099460 | 3001739 | SCOP2 (2022-06-29) |
| X [auth a] | SCOP2 Family | Ribosomal protein S25-like | 8099473 | 4007308 | SCOP2 (2022-06-29) |
| X [auth a] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8099474 | 3000034 | SCOP2 (2022-06-29) |
| W [auth g] | SCOP2 Family | Ribosomal protein S21e | 8099483 | 4006215 | SCOP2 (2022-06-29) |
| W [auth g] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8099484 | 3000068 | SCOP2 (2022-06-29) |
| V [auth e] | SCOP2 Family | Ribosomal protein S8 | 8099479 | 4002027 | SCOP2 (2022-06-29) |
| V [auth e] | SCOP2 Superfamily | Ribosomal protein S8 | 8099480 | 3000709 | SCOP2 (2022-06-29) |
| T [auth f] | SCOP2 Family | Ribosomal protein S2-like | 8099455 | 4003744 | SCOP2 (2022-06-29) |
| T [auth f] | SCOP2 Superfamily | SIS domain/Ribosomal protein S2-like | 8099456 | 3001397 | SCOP2 (2022-06-29) |
| O [auth W] | SCOP2 Family | Ribosomal S3Ae | 8059221 | 4006095 | SCOP2 (2022-06-29) |
| O [auth W] | SCOP2 Superfamily | Ribosomal S3Ae-like | 8059222 | 3002166 | SCOP2 (2022-06-29) |
| N [auth V] | SCOP2 Family | Ribosomal protein L18p and S11 | 8099463 | 4000555 | SCOP2 (2022-06-29) |
| N [auth V] | SCOP2 Superfamily | Translational machinery components | 8099464 | 3000571 | SCOP2 (2022-06-29) |
| M [auth U] | SCOP2 Family | Cold shock DNA-binding domain-like | 8063427 | 4001909 | SCOP2 (2022-06-29) |
| M [auth U] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8063428 | 3000135 | SCOP2 (2022-06-29) |
| L [auth T] | SCOP2 Family | Ribosomal protein S26e | 8059225 | 4006236 | SCOP2 (2022-06-29) |
| L [auth T] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8059226 | 3000068 | SCOP2 (2022-06-29) |
| A [auth p] | SCOP2 Family | WD40-repeat | 8101626 | 4002744 | SCOP2 (2022-06-29) |
| A [auth p] | SCOP2 Superfamily | WD40 repeat-like | 8101627 | 3001694 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth Q] | RRM_1 | e5optQ1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| H [auth O] | RRM_1 | e5optO1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| G [auth M] | RRM_1 | e5optM1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| F [auth L] | RRM_1 | e5optL1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| E [auth u] | RRM_1 | e5optu1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| D [auth t] | RRM_1 | e5optt1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| HA [auth h] | RRM_1 | e5opth1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| GA [auth c] | RRM_1 | e5optc1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| FA [auth o] | RRM_1 | e5opto1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| EA [auth n] | RRM_1 | e5optn1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| DA [auth m] | RRM_1 | e5optm1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| C [auth r] | RRM_1 | e5optr1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| CA [auth l] | RRM_1 | e5optl1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| BA [auth k] | RRM_1 | e5optk1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| AA [auth P] | RRM_1 | e5optP1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| Z [auth j] | RRM_1 | e5optj1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| Y [auth i] | RRM_1 | e5opti1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| X [auth a] | RRM_1 | e5opta1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| W [auth g] | RRM_1 | e5optg1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| V [auth e] | RRM_1 | e5opte1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| U [auth d] | RRM_1 | e5optd1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| T [auth f] | RRM_1 | e5optf1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| B [auth q] | RRM_1 | e5optq1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| S [auth b] | RRM_1 | e5optb1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| R [auth Z] | RRM_1 | e5optZ1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| Q [auth Y] | RRM_1 | e5optY1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| P [auth X] | RRM_1 | e5optX1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| O [auth W] | RRM_1 | e5optW1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| N [auth V] | RRM_1 | e5optV1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| M [auth U] | RRM_1 | e5optU1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| L [auth T] | RRM_1 | e5optT1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| K [auth S] | RRM_1 | e5optS1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| J [auth R] | RRM_1 | e5optR1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
| A [auth p] | RRM_1 | e5optp1 | A: alpha bundles | X: SH3 | H: SH3 | T: SH3 | F: RRM_1 | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| I [auth Q] | PF01251 | Ribosomal protein S7e (Ribosomal_S7e) | Ribosomal protein S7e | - | Family |
| H [auth O] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
| H [auth O] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| G [auth M] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| G [auth M] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| G [auth M] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| F [auth L] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| F [auth L] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
| F [auth L] | PF16121 | 40S ribosomal protein S4 C-terminus (40S_S4_C) | 40S ribosomal protein S4 C-terminus | - | Family |
| F [auth L] | PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain |
| F [auth L] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| F [auth L] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| IA [auth E] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| AA [auth P] | PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family |
| AA [auth P] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
| R [auth Z] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |
| Q [auth Y] | PF01282 | Ribosomal protein S24e (Ribosomal_S24e) | Ribosomal protein S24e | - | Family |
| P [auth X] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| P [auth X] | PF16205 | Ribosomal_S17 N-terminal (Ribosomal_S17_N) | Ribosomal_S17 N-terminal | - | Family |
| N [auth V] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| M [auth U] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| M [auth U] | PF01200 | Ribosomal protein S28e (Ribosomal_S28e) | Ribosomal protein S28e | Domain | |
| L [auth T] | PF01283 | Ribosomal protein S26e (Ribosomal_S26e) | Ribosomal protein S26e | - | Family |
| L [auth T] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| K [auth S] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |
| J [auth R] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| J [auth R] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |














