Crystal structure of the broadly neutralizing Influenza A antibody VRC 315 53-1A09 Fab.


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth L]Saf-Nte_piline5u4rL1 A: beta barrelsX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF: Saf-Nte_pilinECOD (v294.2)
BMethyltransf_25e5u4rB1 A: beta barrelsX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: Methyltransf_25ECOD (v294.2)
C [auth H]Saf-Nte_piline5u4rH1 A: beta barrelsX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF: Saf-Nte_pilinECOD (v294.2)
AMethyltransf_25e5u4rA1 A: beta barrelsX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-CT: FAD-linked reductases-CF: Methyltransf_25ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D [auth L]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
B2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
C [auth H]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
A2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
B,
D [auth L]
Fab VRC 315 53-1A09 L-KAPPA Homo sapiens (human) IGKV1-39*01, IGKV1D-39*01, IGKJ1S1*01, IGKJ4*01, IGKC*01 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-1_KAPPA IMGT (202617-0)
A,
C [auth H]
Fab VRC 315 53-1A09 VH-CH1 Homo sapiens (human) IGHV3-11*01, IGHV3-11*04, IGHJ6*01, IGHJ6*02, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_KAPPA IMGT (202617-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B,
D [auth L]
Light ChainIGKV1 Kappa-SAbDab (2026-05-08)
A,
C [auth H]
Heavy ChainIGHV3 --SAbDab (2026-05-08)