5W17 | pdb_00005w17

Crystal structure of Campylobacter jejuni YCEI protein that crystallizes with large solvent channels for nanotechnology applications

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyYceI-like 8075169 4000920 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyYceI-like 8075170 3001989 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AYceIe5w17A1 A: a/b three-layered sandwichesX: Protein kinase/SAICAR synthase/ATP-graspH: Protein kinase/SAICAR synthase/ATP-graspT: Undecaprenyl diphosphate synthaseF: YceIECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.40.128.110 Mainly Beta Beta Barrel Lipocalin Lipid/polyisoprenoid-binding, YceI-likeCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF04264YceI-like domain (YceI)YceI-like domainE. coli YceI is a base-induced periplasmic protein [1]. The recent structure of a member of this family shows that it binds to poly-isoprenoid [2]. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lip ...E. coli YceI is a base-induced periplasmic protein [1]. The recent structure of a member of this family shows that it binds to poly-isoprenoid [2]. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036761Lipid/polyisoprenoid-binding, YceI-like superfamilyHomologous Superfamily
IPR007372Lipid/polyisoprenoid-binding, YceI-likeDomain