5WK6 | pdb_00005wk6

Cryo-EM structure of P. aeruginosa flagellar filaments G420A

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
BA [auth b]	SBP_bac_1	e5wk6b1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
C	SBP_bac_1	e5wk6C1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
EA [auth e]	SBP_bac_1	e5wk6e1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
FA [auth f]	SBP_bac_1	e5wk6f1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
GA [auth g]	SBP_bac_1	e5wk6g1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
HA [auth h]	SBP_bac_1	e5wk6h1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
I	SBP_bac_1	e5wk6I1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
IA [auth i]	SBP_bac_1	e5wk6i1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
J	SBP_bac_1	e5wk6J1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
K	SBP_bac_1	e5wk6K1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
NA [auth n]	SBP_bac_1	e5wk6n1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
O	SBP_bac_1	e5wk6O1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
Q	SBP_bac_1	e5wk6Q1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
W	SBP_bac_1	e5wk6W1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
X	SBP_bac_1	e5wk6X1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
Z	SBP_bac_1	e5wk6Z1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
Y	SBP_bac_1	e5wk6Y1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
V	SBP_bac_1	e5wk6V1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
U	SBP_bac_1	e5wk6U1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
T	SBP_bac_1	e5wk6T1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
S	SBP_bac_1	e5wk6S1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
R	SBP_bac_1	e5wk6R1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
P	SBP_bac_1	e5wk6P1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
OA [auth o]	SBP_bac_1	e5wk6o1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
N	SBP_bac_1	e5wk6N1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
MA [auth m]	SBP_bac_1	e5wk6m1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
M	SBP_bac_1	e5wk6M1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
LA [auth l]	SBP_bac_1	e5wk6l1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
L	SBP_bac_1	e5wk6L1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
KA [auth k]	SBP_bac_1	e5wk6k1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
JA [auth j]	SBP_bac_1	e5wk6j1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
H	SBP_bac_1	e5wk6H1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
G	SBP_bac_1	e5wk6G1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
F	SBP_bac_1	e5wk6F1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
E	SBP_bac_1	e5wk6E1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
DA [auth d]	SBP_bac_1	e5wk6d1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
D	SBP_bac_1	e5wk6D1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
CA [auth c]	SBP_bac_1	e5wk6c1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
B	SBP_bac_1	e5wk6B1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
AA [auth a]	SBP_bac_1	e5wk6a1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)
A	SBP_bac_1	e5wk6A1	A: beta barrels	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: SBP_bac_1	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, Q, R, S, T, U, V, W, X, Y, Z	PF00700	Bacterial flagellin C-terminal helical region (Flagellin_C)	Bacterial flagellin C-terminal helical region	Flagellins polymerise to form bacterial flagella. There is some similarity between this entry and Pfam:PF00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate [2] and this is shown to be correct as structur ...	Flagellins polymerise to form bacterial flagella. There is some similarity between this entry and Pfam:PF00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate [2] and this is shown to be correct as structurally this domain forms an extended helix that interacts with the N-terminal region (Pfam:PF00669) to form the D0 and D1 structural domains [3]. These domains are responsible for the activation of TLR5, with the C-terminal D0 region playing a key role [4-6].	Domain
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, Q, R, S, T, U, V, W, X, Y, Z	PF00669	Bacterial flagellin N-terminal helical region (Flagellin_N)	Bacterial flagellin N-terminal helical region	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, Q, R, S, T, U, V, W, X, Y, Z	B-type flagellin	structural molecule activity	bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	cell projection cellular anatomical structure organelle membraneless organelle bacterial-type flagellum extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, Q, R, S, T, U, V, W, X, Y, Z	IPR046358	Flagellin, C-terminal domain	Domain
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, Q, R, S, T, U, V, W, X, Y, Z	IPR001029	Flagellin, N-terminal domain	Domain
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, Q, R, S, T, U, V, W, X, Y, Z	IPR042187	Flagellin, C-terminal domain, subdomain 2	Homologous Superfamily
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, Q, R, S, T, U, V, W, X, Y, Z	IPR001492	Flagellin	Family
A, AA [auth a], B, BA [auth b], C, A, AA [auth a], B, BA [auth b], C, CA [auth c], D, DA [auth d], E, EA [auth e], F, FA [auth f], G, GA [auth g], H, HA [auth h], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, Q, R, S, T, U, V, W, X, Y, Z	IPR010810	Flagellin hook, IN motif	Conserved Site

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.