[NiFe]-hydrogenase (Hyb-type) from Citrobacter sp. S-77 in an air-oxidized condition
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A [auth L] | d5xvdl_ | Multi-domain proteins (alpha and beta) | HydB/Nqo4-like | HydB/Nqo4-like | automated matches | automated matches | (Citrobacter sp. S-77 ) [TaxId: 1080067 ], | SCOPe (2.08) |
| C [auth M] | d5xvdm_ | Multi-domain proteins (alpha and beta) | HydB/Nqo4-like | HydB/Nqo4-like | automated matches | automated matches | (Citrobacter sp. S-77 ) [TaxId: 1080067 ], | SCOPe (2.08) |
| D [auth T] | d5xvdt_ | Multi-domain proteins (alpha and beta) | HydA/Nqo6-like | HydA/Nqo6-like | automated matches | automated matches | (Citrobacter sp. MGH106 ) [TaxId: 1686381 ], | SCOPe (2.08) |
| B [auth S] | d5xvds_ | Multi-domain proteins (alpha and beta) | HydA/Nqo6-like | HydA/Nqo6-like | automated matches | automated matches | (Citrobacter sp. MGH106 ) [TaxId: 1686381 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A [auth L] | e5xvdL1 | A: L-aspartase middle domain-like | X: gp11/gp12 receptor-binding domain | H: gp11/gp12 receptor-binding domain | T: Chlorophyllase2 | F: | ECOD (20:10:01) | |
| C [auth M] | e5xvdM1 | A: L-aspartase middle domain-like | X: gp11/gp12 receptor-binding domain | H: gp11/gp12 receptor-binding domain | T: Chlorophyllase2 | F: | ECOD (20:10:01) | |
| D [auth T] | e5xvdT1 | A: L-aspartase middle domain-like | X: gp11/gp12 receptor-binding domain | H: gp11/gp12 receptor-binding domain | T: Chlorophyllase2 | F: | ECOD (20:10:01) | |
| B [auth S] | e5xvdS1 | A: L-aspartase middle domain-like | X: gp11/gp12 receptor-binding domain | H: gp11/gp12 receptor-binding domain | T: Cytochrom_C | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A [auth L] | 1.10.645.10 | Mainly Alpha | Orthogonal Bundle | Cytochrome-c3 Hydrogenase | chain B | CATH (4.3.0) |
| C [auth M] | 1.10.645.10 | Mainly Alpha | Orthogonal Bundle | Cytochrome-c3 Hydrogenase | chain B | CATH (4.3.0) |
| D [auth T] | 3.40.50.700 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NADH:ubiquinone oxidoreductase-like, 20kDa subunit | CATH (4.3.0) |
| D [auth T] | 4.10.480.10 | Few Secondary Structures | Irregular | Cytochrome-c3 Hydrogenase | Chain A, domain 2 | CATH (4.3.0) |
| B [auth S] | 3.40.50.700 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | NADH:ubiquinone oxidoreductase-like, 20kDa subunit | CATH (4.3.0) |
| B [auth S] | 4.10.480.10 | Few Secondary Structures | Irregular | Cytochrome-c3 Hydrogenase | Chain A, domain 2 | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| A [auth L], C [auth M] | [NiFe]-hydrogenase 2 large subunit |
| - | |
| B [auth S], D [auth T] | Hydrogenase-2 small chain | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| A [auth L], C [auth M] | IPR001501 | Nickel-dependent hydrogenase, large subunit | Family |
| A [auth L], C [auth M] | IPR029014 | [NiFe]-hydrogenase, large subunit | Homologous Superfamily |
| A [auth L], C [auth M] | IPR018194 | Nickel-dependent hydrogenase, large subunit, nickel binding site | Binding Site |
| A [auth L], C [auth M] | IPR050867 | [NiFe]/[NiFeSe] hydrogenase large subunit | Family |
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| A [auth L], C [auth M] | CSO | Parent Component: CYS : AA0205 : L-cysteine sulfenic acid MOD:00210 |
