5YP8 | pdb_00005yp8

p62/SQSTM1 ZZ domain with Arg-peptide

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	RING/U-box like	8081306	3000160	SCOP2B (2022-06-29)
A	SCOP2 Family	ZZ domain	8081305	4002878	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	RING/U-box like	8081306	3000160	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Chlorophyllase2	e5yp8B1	A: alpha bundles	X: PriB N-terminal domain-like	H: gp11/gp12 receptor-binding domain	T: gp11/gp12 receptor-binding domain	F: Chlorophyllase2	ECOD (develop294)
A	DapB_N	e5yp8A1	A: alpha bundles	X: PriB N-terminal domain-like	H: ADP-ribosylation	T: ADP-ribosylation	F: DapB_N	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00569	Zinc finger, ZZ type (ZZ)	Zinc finger, ZZ type	Zinc finger present in dystrophin, CBP/p300. ZZ in dystrophin binds calmodulin. Putative zinc finger; binding not yet shown. Four to six cysteine residues in its sequence are responsible for coordinating zinc ions, to reinforce the structure [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	78 kDa glucose-regulated protein,Sequestosome-1	protein binding binding misfolded protein binding heat shock protein binding protein-folding chaperone binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding protein binding binding misfolded protein binding heat shock protein binding protein-folding chaperone binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cell adhesion molecule binding cadherin binding ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding cation binding calcium ion binding metal ion binding protein domain specific binding molecular sequestering activity protein sequestering activity ATP-dependent protein folding chaperone protein folding chaperone ATP-dependent activity unfolded protein binding ribonucleoprotein complex binding protein-containing complex binding ribosome binding enzyme regulator activity protein kinase inhibitor activity molecular function inhibitor activity molecular function regulator activity enzyme inhibitor activity protein kinase regulator activity protein serine/threonine kinase inhibitor activity kinase inhibitor activity kinase regulator activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity protein-macromolecule adaptor activity molecular adaptor activity ubiquitin-modified protein reader activity ubiquitin-like protein reader activity protein tyrosine kinase binding kinase binding signaling receptor binding receptor tyrosine kinase binding protein kinase binding identical protein binding molecular transducer activity signaling receptor activity signaling adaptor activity SH2 domain binding molecular condensate scaffold activity ubiquitin binding ubiquitin-like protein binding ionotropic glutamate receptor binding glutamate receptor binding polyubiquitin modification-dependent protein binding modification-dependent protein binding K63-linked polyubiquitin modification-dependent protein binding protein kinase C binding transition metal ion binding zinc ion binding	protein refolding primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process cellular response to stimulus regulation of cellular process response to stimulus protein refolding primary metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process cellular response to stimulus regulation of cellular process response to stimulus signaling regulation of cellular response to stress endoplasmic reticulum unfolded protein response regulation of response to endoplasmic reticulum stress regulation of signal transduction intracellular signal transduction cell communication regulation of endoplasmic reticulum unfolded protein response cellular response to stress regulation of intracellular signal transduction response to stress regulation of response to stress signal transduction regulation of IRE1-mediated unfolded protein response response to endoplasmic reticulum stress regulation of biological process regulation of signaling cellular response to topologically incorrect protein biological regulation cellular response to unfolded protein response to unfolded protein regulation of response to stimulus response to topologically incorrect protein IRE1-mediated unfolded protein response regulation of cell communication catabolic process proteasomal protein catabolic process protein catabolic process macromolecule catabolic process ERAD pathway response to chemical cellular response to nutrient levels response to nutrient levels response to starvation cellular response to glucose starvation cellular response to starvation response to interleukin-4 response to peptide response to cytokine cellular response to cytokine stimulus cellular response to interleukin-4 ATF6-mediated unfolded protein response regulation of ATF6-mediated unfolded protein response ER-nucleus signaling pathway regulation of cellular component organization negative regulation of cellular component organization protein-containing complex organization negative regulation of biological process regulation of cellular component biogenesis negative regulation of protein-containing complex assembly cellular component organization cellular component biogenesis regulation of protein-containing complex assembly cellular component assembly protein-containing complex assembly negative regulation of cellular process cellular component organization or biogenesis developmental process multicellular organismal process head development animal organ development brain development nervous system development cerebellar cortex development multicellular organism development cerebellar Purkinje cell layer development cerebellum development central nervous system development metencephalon development anatomical structure development hindbrain development system development cerebellum morphogenesis hindbrain morphogenesis anatomical structure morphogenesis cerebellum structural organization anatomical structure arrangement hindbrain structural organization negative regulation of transforming growth factor beta receptor signaling pathway cell surface receptor protein serine/threonine kinase signaling pathway cellular response to growth factor stimulus negative regulation of signaling cellular response to transforming growth factor beta stimulus regulation of transmembrane receptor protein serine/threonine kinase signaling pathway negative regulation of cell communication regulation of transforming growth factor beta receptor signaling pathway cellular response to endogenous stimulus enzyme-linked receptor protein signaling pathway cell surface receptor signaling pathway negative regulation of response to stimulus regulation of cellular response to transforming growth factor beta stimulus response to endogenous stimulus regulation of cellular response to growth factor stimulus negative regulation of signal transduction response to transforming growth factor beta transforming growth factor beta receptor signaling pathway response to growth factor transforming growth factor beta receptor superfamily signaling pathway negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway negative regulation of intracellular signal transduction negative regulation of IRE1-mediated unfolded protein response negative regulation of endoplasmic reticulum unfolded protein response negative regulation of response to endoplasmic reticulum stress maintenance of protein location cellular localization maintenance of location maintenance of location in cell localization maintenance of protein localization in endoplasmic reticulum maintenance of protein location in cell macromolecule localization protein localization to organelle maintenance of protein localization in organelle intracellular protein localization protein localization to endoplasmic reticulum response to biotic stimulus cellular response to biotic stimulus ER overload response positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression positive regulation of RNA biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process establishment of protein localization transport protein targeting protein transmembrane transport establishment of localization in cell post-translational protein targeting to membrane, translocation establishment of protein localization to endoplasmic reticulum establishment of protein localization to membrane intracellular protein transmembrane transport intracellular transport post-translational protein targeting to endoplasmic reticulum membrane localization within membrane establishment of localization protein targeting to membrane transmembrane transport establishment of protein localization to organelle protein transport intracellular protein transport protein targeting to ER negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process apoptotic process programmed cell death regulation of protein folding in endoplasmic reticulum regulation of protein folding protein folding in endoplasmic reticulum regulation of protein modification process positive regulation of protein metabolic process regulation of protein ubiquitination positive regulation of post-translational protein modification positive regulation of protein modification process protein ubiquitination regulation of protein modification by small protein conjugation or removal protein modification process positive regulation of protein modification by small protein conjugation or removal positive regulation of protein ubiquitination regulation of post-translational protein modification regulation of protein metabolic process macromolecule modification post-translational protein modification protein modification by small protein conjugation protein modification by small protein conjugation or removal substantia nigra development midbrain development neural nucleus development positive regulation of locomotion regulation of cell motility positive regulation of cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration cell migration cell motility locomotion PERK-mediated unfolded protein response integrated stress response signaling intracellular signaling cassette regulation of PERK-mediated unfolded protein response negative regulation of PERK-mediated unfolded protein response positive regulation of response to biotic stimulus immune response-regulating cell surface receptor signaling pathway pattern recognition receptor signaling pathway immune response-activating signaling pathway positive regulation of immune response regulation of immune system process positive regulation of immune system process cell surface toll-like receptor signaling pathway innate immune response-activating signaling pathway immune response response to other organism immune response-activating cell surface receptor signaling pathway regulation of innate immune response response to external stimulus regulation of toll-like receptor 4 signaling pathway defense response to other organism regulation of pattern recognition receptor signaling pathway positive regulation of defense response activation of innate immune response regulation of immune response activation of immune response regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of response to external stimulus innate immune response activating cell surface receptor signaling pathway positive regulation of response to stimulus positive regulation of response to external stimulus immune response-regulating signaling pathway innate immune response response to external biotic stimulus negative regulation of toll-like receptor 4 signaling pathway cell surface pattern recognition receptor signaling pathway positive regulation of innate immune response defense response defense response to symbiont negative regulation of immune system process immune system process toll-like receptor 4 signaling pathway negative regulation of post-translational protein modification negative regulation of protein modification process negative regulation of protein ubiquitination negative regulation of protein metabolic process negative regulation of macromolecule metabolic process negative regulation of protein modification by small protein conjugation or removal negative regulation of metabolic process positive regulation of protein localization to plasma membrane regulation of localization regulation of protein localization regulation of protein localization to membrane positive regulation of protein localization to cell periphery protein localization to cell periphery protein localization to plasma membrane positive regulation of protein localization to membrane regulation of protein localization to cell periphery protein localization to membrane regulation of cellular localization positive regulation of protein localization regulation of protein localization to plasma membrane response to ischemia autophagy process utilizing autophagic mechanism regulation of protein complex stability regulation of biological quality macroautophagy aggrephagy positive regulation of programmed cell death positive regulation of apoptotic process response to mitochondrial depolarisation small GTPase-mediated signal transduction regulation of small GTPase mediated signal transduction Ras protein signal transduction regulation of Ras protein signal transduction nucleocytoplasmic transport nuclear transport protein localization to nucleus import into nucleus protein import into nucleus modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process fat cell proliferation cell population proliferation brown fat cell proliferation vesicle-mediated transport endosomal transport regulation of organelle organization organelle organization regulation of mitochondrion organization mitochondrion organization negative regulation of RNA biosynthetic process negative regulation of nucleobase-containing compound metabolic process negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process positive regulation of autophagy regulation of catabolic process regulation of autophagy positive regulation of catabolic process vesicle organization endosome organization endomembrane system organization cellular developmental process cell differentiation positive regulation of cell communication modulation of chemical synaptic transmission long-term synaptic potentiation synaptic signaling positive regulation of long-term synaptic potentiation regulation of synaptic plasticity trans-synaptic signaling cell-cell signaling positive regulation of synaptic transmission chemical synaptic transmission regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of long-term synaptic potentiation positive regulation of signaling multicellular organismal-level homeostasis homeostatic process energy homeostasis protein targeting to vacuole involved in autophagy establishment of protein localization to vacuole protein targeting to vacuole protein localization to vacuole vacuolar transport autophagy of peroxisome pexophagy negative regulation of ferroptosis regulation of ferroptosis ferroptosis autophagy of mitochondrion temperature homeostasis mitophagy organelle assembly membraneless organelle assembly canonical NF-kappaB signal transduction regulation of canonical NF-kappaB signal transduction protein localization to perinuclear region of cytoplasm	cellular anatomical structure membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol cellular anatomical structure membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen endoplasmic reticulum lumen intracellular organelle organelle lumen endoplasmic reticulum endoplasmic reticulum-Golgi intermediate compartment mitochondrion midbody anchoring junction cell junction focal adhesion cell-substrate junction pigment granule intracellular vesicle melanosome cytoplasmic vesicle cell surface cell periphery plasma membrane protein-containing complex organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network organelle membrane endoplasmic reticulum membrane endoplasmic reticulum chaperone complex endoplasmic reticulum protein-containing complex nucleus cell projection sperm midpiece cilium 9+2 motile cilium sperm flagellum motile cilium plasma membrane bounded cell projection inclusion body synapse glutamatergic synapse vacuole autophagosome intracellular membraneless organelle sarcomere membraneless organelle contractile muscle fiber supramolecular fiber myofibril supramolecular polymer supramolecular complex amphisome autolysosome lytic vacuole secondary lysosome lysosome phagophore assembly site aggresome nucleoplasm nuclear lumen Lewy body endosome late endosome cytoplasmic ribonucleoprotein granule ribonucleoprotein granule P-body nuclear body PML body

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR042050	Endoplasmic reticulum chaperone BIP, nucleotide-binding domain	Domain
A, B	IPR013126	Heat shock protein 70 family	Family
A, B	IPR018181	Heat shock protein 70, conserved site	Conserved Site
A, B	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
A, B	IPR029048	Heat shock protein 70kD, C-terminal domain superfamily	Homologous Superfamily
A, B	IPR029047	Heat shock protein 70kD, peptide-binding domain superfamily	Homologous Superfamily
A, B	IPR043145	Zinc finger, ZZ-type superfamily	Homologous Superfamily
A, B	IPR000433	Zinc finger, ZZ-type	Domain
A, B	IPR033741	Sequestosome-1, UBA domain	Domain
A, B	IPR053793	PB1-like domain	Domain
A, B	IPR009060	UBA-like superfamily	Homologous Superfamily
A, B	IPR000270	PB1 domain	Domain
A, B	IPR052260	Autophagy Receptor and Signaling Regulator	Family
A, B	IPR015940	Ubiquitin-associated domain	Domain
A, B	IPR034866	Sequestosome-1, PB1 domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q13501	spinocerebellar ataxia type 17 asbestosis chronic myelogenous leukemia, BCR-ABL1 positive esophageal squamous cell carcinoma obesity disorder Respiratory Hypersensitivity myocardial infarction hematopoietic and lymphoid system neoplasm ovarian cancer bipolar I disorder hepatocellular carcinoma malignant pancreatic neoplasm pancreatic ductal adenocarcinoma tuberculosis astrocytic tumor spinocerebellar ataxia type 17 asbestosis chronic myelogenous leukemia, BCR-ABL1 positive esophageal squamous cell carcinoma obesity disorder Respiratory Hypersensitivity myocardial infarction hematopoietic and lymphoid system neoplasm ovarian cancer bipolar I disorder hepatocellular carcinoma malignant pancreatic neoplasm pancreatic ductal adenocarcinoma tuberculosis astrocytic tumor breast cancer Crohn disease glioblastoma osteosarcoma plasma cell myeloma Sjogren syndrome bipolar disorder cancer drug-induced liver injury lung adenocarcinoma myopathy amyotrophic lateral sclerosis frontotemporal dementia and/or amyotrophic lateral sclerosis 3 neurodegeneration with ataxia, dystonia, and gaze palsy, childhood-onset bone Paget disease Paget disease of bone 3 age-related macular degeneration neurodegenerative disease behavioral variant of frontotemporal dementia NONAKA MYOPATHY Paget disease of bone 2, early-onset pancreatic intraductal papillary-mucinous carcinoma sarcoma tuberculosis GNE myopathy large cell medulloblastoma medulloblastoma osteosarcoma pituitary cancer spina bifida Alzheimer disease cancer hepatocellular carcinoma lung cancer myopathy, distal, with rimmed vacuoles non-small cell lung carcinoma ovarian cancer pancreatic ductal adenocarcinoma psoriasis subependymal giant cell astrocytoma distal myopathy frontotemporal dementia with motor neuron disease malignant mesothelioma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.